| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,389,986 – 15,390,089 |
| Length | 103 |
| Max. P | 0.712118 |
| Location | 15,389,986 – 15,390,089 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 78.97 |
| Shannon entropy | 0.40365 |
| G+C content | 0.41858 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -16.84 |
| Energy contribution | -16.12 |
| Covariance contribution | -0.73 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.712118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15389986 103 - 27905053 GGUGUCGAGUGGCAUUGAGAGAUUAUUUUCCGGCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUUGACUGAACUGGAAACCAGUUAAGCAUAACGAAUUUAUCA--- ((((((....))))))....(((....((((((((((((((((..((...))..).))))))))).)))((((((...)))))).........)))...))).--- ( -27.40, z-score = -0.91, R) >droEre2.scaffold_4770 11496631 103 + 17746568 GGUGUCGAGUGGCAUUGAGAGAUUAUUUUCCGUCGAUUUCCGCUGAUCCAAUUGGUCGGGAAUCGAGUGAACCGGAAACCAGUUAACCAAAACGAAUUUAUCA--- (((...((.(((.(((....)))...(((((((((((((((((..((...))..).))))))))))(....)))))))))).)).)))...............--- ( -29.00, z-score = -0.90, R) >droYak2.chr3R 4138624 103 - 28832112 GGUGUCGAGUGGCAUUGAGAGAUUAUUUUCCGGCGAUUUCCGCUGAUUCAAUUGGUCGAAAAUCGACUGAACCGGAAACCAGUUAACCAAAACGAAUUUAUCA--- (((...((.(((.(((....)))...(((((((((.....)))........(..((((.....))))..)..))))))))).)).)))...............--- ( -25.20, z-score = -0.39, R) >droSec1.super_25 441389 103 + 827797 GGUGUCGAGUGGCAUUGAGAGAUUAUUUUCCGGCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUCGACUGAACUGGAAACCAGUUAAGCAAAACGAAUUUAUCA--- ((((((....))))))....(((....((((((((((((((((..((...))..).))))))))).)))((((((...)))))).........)))...))).--- ( -29.50, z-score = -1.33, R) >droSim1.chr3R 21434209 103 + 27517382 GGUGUCGAGUGGCAUUGAGAGAUUAUUUUCCGGCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUCGACUGAACUGGAAACCAGUUAAGCAAAACGAAUUUAUCA--- ((((((....))))))....(((....((((((((((((((((..((...))..).))))))))).)))((((((...)))))).........)))...))).--- ( -29.50, z-score = -1.33, R) >anoGam1.chrU 48271866 98 + 59568033 GUUGCCGAGUUUCGGUUCAAAUAUUUAUUUAACUGAUAUUU-CAGUUUUAAAUGGU-----ACUGAUUU--UCGGCUACUGGGUUUUUUCAACUGACAUAUCAGCA ((.((((((..(((((.....((((((...((((((....)-))))).))))))..-----)))))..)--))))).)).............((((....)))).. ( -28.30, z-score = -4.67, R) >consensus GGUGUCGAGUGGCAUUGAGAGAUUAUUUUCCGGCGAUUUCCGCUGAUUCAAUUGGUCGGGAAUCGACUGAACCGGAAACCAGUUAAGCAAAACGAAUUUAUCA___ ((((((....))))))..((((....))))(((((((((((((..((...))..).))))))))).)))((((((...))))))...................... (-16.84 = -16.12 + -0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:01 2011