| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,388,668 – 15,388,782 |
| Length | 114 |
| Max. P | 0.669190 |
| Location | 15,388,668 – 15,388,782 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 69.08 |
| Shannon entropy | 0.55771 |
| G+C content | 0.36363 |
| Mean single sequence MFE | -24.82 |
| Consensus MFE | -11.91 |
| Energy contribution | -13.56 |
| Covariance contribution | 1.65 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15388668 114 + 27905053 UACAACUGCUCGUUAAGUGCCCGUUCUGUGAUGGGAGAAAAGAACUGAAUUUUCAAGAGGAAAUCGAAUUUAGUUUGUUUUUCCGAAAAAGUUC--AACUUAUGGCAGUAGUACCU (((.((((((...(((((.((((((....))))))......(((((...(((((....(((((.(((((...)))))..)))))))))))))))--.))))).)))))).)))... ( -30.80, z-score = -2.39, R) >droSim1.chr3R 21432913 114 - 27517382 UACAACUGCUCGUUAAGUGUCCGUUCUGUGAUGGGAGAAAAGAAGUGCAUUUUCAAGAGGAAAUUGAAUUUAGUUUGUUUUUCCGAAAAAGUUC--AACUUAUGGCAGUAGUAUCA (((.((((((...(((((.(((.((((.....))))(((((........)))))....)))...(((((((..((((......)))).))))))--)))))).)))))).)))... ( -24.80, z-score = -0.74, R) >droSec1.super_25 440092 114 - 827797 UACAACUGCUUGUUAAGUGUCCGUUCUGUGAUGGAAGAAAAGAAGUGCAUUUUCCAGAGGAAAUCGAAUUUAGUUUGUUUUUCCGAAAAAGUUC--AACUUAUGUCAGUAGUACCA ....((((((...((((((..(.(((.....(((((((...........)))))))..(((((.(((((...)))))..))))))))...)..)--.)))))....)))))).... ( -22.60, z-score = -0.54, R) >droYak2.chr3R 4137358 114 + 28832112 UACAUCUGCUCGUUAAGUGUCCAUUCUGUGAUGGGAGAAAAGAUCUGCAUUUUUAAGAGGAACUCAAAUUUAGUUUGUUUUUCCGAAUGAGUUU--AACUUAUGGCAGAAGUACUA (((.((((((...(((((..((((((.......(.(((.....))).)..........((((..(((((...)))))...))))))))).)...--.))))).)))))).)))... ( -25.80, z-score = -0.76, R) >droPer1.super_6 5256305 89 + 6141320 ---------UUUUUUGGCUUUUUUUGUGUCACU---------UUCCGGGGCUUAAAGCAGUGAUUCAAUUACAUUUUUCGCACAGAAAAAGUCUCAAAGGUAUACCC--------- ---------......((((((((((((((....---------.......((.....)).(((((...))))).......)))))))))))))).....((....)).--------- ( -20.10, z-score = -1.82, R) >consensus UACAACUGCUCGUUAAGUGUCCGUUCUGUGAUGGGAGAAAAGAACUGCAUUUUCAAGAGGAAAUCGAAUUUAGUUUGUUUUUCCGAAAAAGUUC__AACUUAUGGCAGUAGUACCA (((.((((((...(((((.((((((....)))))).......................((((..(((((...)))))...)))).............))))).)))))).)))... (-11.91 = -13.56 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:28:00 2011