| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,386,906 – 15,386,997 |
| Length | 91 |
| Max. P | 0.758730 |
| Location | 15,386,906 – 15,386,997 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.75 |
| Shannon entropy | 0.56531 |
| G+C content | 0.50304 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -12.96 |
| Energy contribution | -12.51 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15386906 91 - 27905053 CCACAGCUGAUGG-CUGGCACUAAUAGCGUACUAAUCGCCCUAAUUGCUCUGGUCGCAAUUAUCAUUGACGCUUUCCCAGCCUCUCACCUCC---------------------------- ....((.(((.((-((((.......(((((...........(((((((.......)))))))......)))))...))))))..))).))..---------------------------- ( -22.03, z-score = -1.81, R) >droSim1.chr3R 21431127 91 + 27517382 CCACAGCUGAUGG-CUGGCACUAAUAGCGUACUAAUCGCCCUAAUUGCUCUGGUCGCAAUUAUCAUUGACGCUUUCCCAGCCUCCCAACGCC---------------------------- .....((((..((-((((.......(((((...........(((((((.......)))))))......)))))...))))))...))..)).---------------------------- ( -20.73, z-score = -0.80, R) >droSec1.super_25 438306 91 + 827797 CCACAGCUGAUGG-CUGGCACUAAUAGCGUACUAAUCGCCCUAAUUGCUAUGGUCACAAUUAUCAUUGACGCUUUCCCAGCCUCCCAACGCC---------------------------- .....((((..((-((((.......(((((.......(((.((.....)).)))..((((....)))))))))...))))))...))..)).---------------------------- ( -18.40, z-score = -0.36, R) >droYak2.chr3R 4135463 91 - 28832112 CCACAGCUGAUGG-CUGGCACUAAUAGCGUACUAAUCGCUCUAAUUGCUCUGGUCGCAAUUAUCAUUGACGCUUUCCCAGCCUUCCUACAAC---------------------------- ........((.((-((((.......(((((...........(((((((.......)))))))......)))))...)))))).)).......---------------------------- ( -21.23, z-score = -1.60, R) >droEre2.scaffold_4770 11493741 91 + 17746568 CCACAGCUGAUGG-CUGGCACUAAUAGCGUACUAAUCGCUCUAAUUGCUCUGGUCGCAAUUAUCAUUGACGCCUUCCCAGCCUUGCCACAAC---------------------------- .((..((((..((-..(((......((((.......)))).(((((((.......)))))))........)))..))))))..)).......---------------------------- ( -21.80, z-score = -1.08, R) >droAna3.scaffold_13340 8682500 87 + 23697760 CAACAGCUGAUGG-CAGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUCUGGUCGCAAUUAUCGUCCUCCACCCCCCAGCCUCAGAA-------------------------------- ......((((.((-(.((........(((.......)))..(((((((.......)))))))..............)).)))))))..-------------------------------- ( -19.90, z-score = -0.94, R) >droPer1.super_6 5253886 90 - 6141320 -UCUCUCUGAUGA-CUGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUCUGGUCGCAAUUAUCGUUGACGCCUCUCCUCCUUCUCCGCCGC---------------------------- -.......((.((-..(((.......(((.......)))..(((((((.......)))))))........)))..)).))............---------------------------- ( -16.40, z-score = -0.63, R) >dp4.chr2 29884454 90 - 30794189 -UCUCUCUGAUGA-CUGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUCUGGUCGCAAUUAUCGUUGACGCCUCUCCUCCUUCUCCGCCGC---------------------------- -.......((.((-..(((.......(((.......)))..(((((((.......)))))))........)))..)).))............---------------------------- ( -16.40, z-score = -0.63, R) >droMoj3.scaffold_6540 21626231 112 + 34148556 CAACUGUUGAUGGUUUGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUUUGGCUGCAAUUAUCGUUGACGCCUCCUCGUGGGC--------GUGGCCAUUGGUGAUCUGUCGCCAUUGU (((((((..(....)..)))......(((.......)))..(((((((.......)))))))..))))((((((......))))--------))...((.((((((....)))))).)). ( -32.30, z-score = -0.34, R) >droGri2.scaffold_15116 728801 119 + 1808639 CAACUGUUGAUGG-UUGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUUUAGAUGCAAUUAUCGUUGACGCCUGCUGUUGGGCGGCAGGGUGUGGCAAUUGGCGAUCUGUCGCCGUUUU ...........((-(((.(((...(((((...((((.(((((((.....)))).))).)))).)))))((.(((((((.....)))))))))))).)))))(((((....)))))..... ( -40.10, z-score = -1.41, R) >droVir3.scaffold_13047 3016902 109 + 19223366 CAACUGUUGAUGGUUUGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUUUGGUUGCAAUUAUCGUUGACGCCUUCUGGUGGGC-----------GCUAUUGGCGGACUGUCGCCAUUGU (((.((.((((((((((...((((((((((.....((((..(((((((.......)))))))..).)))((((....)))).))-----------)))))))))))))))))).))))). ( -35.80, z-score = -2.03, R) >consensus CCACAGCUGAUGG_CUGGCACUAAUAGCGUACUAAUCGCACUAAUUGCUCUGGUCGCAAUUAUCGUUGACGCCUUCCCAGCCUCCCAAC__C____________________________ ...........((...(((.......(((.......)))..(((((((.......)))))))........)))..))........................................... (-12.96 = -12.51 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:59 2011