| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,369,287 – 15,369,382 |
| Length | 95 |
| Max. P | 0.598182 |
| Location | 15,369,287 – 15,369,382 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.65 |
| Shannon entropy | 0.16951 |
| G+C content | 0.36380 |
| Mean single sequence MFE | -14.46 |
| Consensus MFE | -12.67 |
| Energy contribution | -12.11 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.598182 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15369287 95 + 27905053 CUCGCUCUUGACACCAAAUGCCAGCUACAAUAACAUAUUUUUUCAAUUUUUUCUAUUAUUUUAUUCCAUUUAUGCUCGCGUUCAGUGGAAAGUGG ....(.(((..(((..(((((.(((................................................))).)))))..)))..))).). ( -13.81, z-score = -0.95, R) >droSim1.chr3R 21413137 95 - 27517382 CUCGCUCUUGACACCAAAUGCCAGCUACAAUAACAUAUUUUUUCAAUUUUUUCUAUUAUUUUAUUCCAUUUAUGCUCGCGUUCAGUGGGAAGUGG ....(.(((..(((..(((((.(((................................................))).)))))..)))..))).). ( -13.41, z-score = -0.38, R) >droSec1.super_25 420754 86 - 827797 CUCGCUCUUGACACCAAAUGCCAGCUAUUAUAACAUAU---------UUUUUCUAUUAUUUUAUUCCAUUUAUGCUCGCGUUCAGUGGAAAGUGG ....(.(((..(((..(((((.(((.............---------..........................))).)))))..)))..))).). ( -14.03, z-score = -1.05, R) >droEre2.scaffold_4770 11476329 95 - 17746568 CUCACUCUCGCCACCAAAUGCCAGCUACAAUAACAAAUUUUUUCAAAUUUUUCUCCUAUUCUAUUCCAUUUAUGCUCGCGUUCAGUGGAAAGUGG ..((((....((((..(((((.(((................................................))).)))))..))))..)))). ( -16.61, z-score = -2.88, R) >consensus CUCGCUCUUGACACCAAAUGCCAGCUACAAUAACAUAUUUUUUCAAUUUUUUCUAUUAUUUUAUUCCAUUUAUGCUCGCGUUCAGUGGAAAGUGG ..((((.((..(((..(((((.(((................................................))).)))))..))))).)))). (-12.67 = -12.11 + -0.56)
| Location | 15,369,287 – 15,369,382 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 89.65 |
| Shannon entropy | 0.16951 |
| G+C content | 0.36380 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -15.83 |
| Energy contribution | -15.14 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597972 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15369287 95 - 27905053 CCACUUUCCACUGAACGCGAGCAUAAAUGGAAUAAAAUAAUAGAAAAAAUUGAAAAAAUAUGUUAUUGUAGCUGGCAUUUGGUGUCAAGAGCGAG ...(((..(((..((.((.(((.....(......).(((((((......((....)).....))))))).))).)).))..)))..)))...... ( -16.70, z-score = -0.81, R) >droSim1.chr3R 21413137 95 + 27517382 CCACUUCCCACUGAACGCGAGCAUAAAUGGAAUAAAAUAAUAGAAAAAAUUGAAAAAAUAUGUUAUUGUAGCUGGCAUUUGGUGUCAAGAGCGAG ...(((..(((..((.((.(((.....(......).(((((((......((....)).....))))))).))).)).))..)))..)))...... ( -16.70, z-score = -0.83, R) >droSec1.super_25 420754 86 + 827797 CCACUUUCCACUGAACGCGAGCAUAAAUGGAAUAAAAUAAUAGAAAAA---------AUAUGUUAUAAUAGCUGGCAUUUGGUGUCAAGAGCGAG ...(((..(((..((.((.(((.....(......).((((((......---------...))))))....))).)).))..)))..)))...... ( -16.00, z-score = -1.15, R) >droEre2.scaffold_4770 11476329 95 + 17746568 CCACUUUCCACUGAACGCGAGCAUAAAUGGAAUAGAAUAGGAGAAAAAUUUGAAAAAAUUUGUUAUUGUAGCUGGCAUUUGGUGGCGAGAGUGAG .((((((((((..((.((.(((...(((((...............((((((....)))))).)))))...))).)).))..))))..)))))).. ( -25.89, z-score = -3.32, R) >consensus CCACUUUCCACUGAACGCGAGCAUAAAUGGAAUAAAAUAAUAGAAAAAAUUGAAAAAAUAUGUUAUUGUAGCUGGCAUUUGGUGUCAAGAGCGAG ...(((..(((..((.((.(((.....((.(((((....(((................))).))))).))))).)).))..)))..)))...... (-15.83 = -15.14 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:57 2011