| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,358,352 – 15,358,450 |
| Length | 98 |
| Max. P | 0.589141 |
| Location | 15,358,352 – 15,358,450 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.01 |
| Shannon entropy | 0.58351 |
| G+C content | 0.34768 |
| Mean single sequence MFE | -22.56 |
| Consensus MFE | -7.69 |
| Energy contribution | -7.89 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15358352 98 - 27905053 --------UUAUUUUCCUUUUGUUCAGCACUGCCAUGCACAAUUCAAUUUGGCAAAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-ACAAGUCA--UGGAAAAUAUA----- --------.((((((((.((((((......(((((..............))))).........(((.(((........))).))).)-)))))...--.))))))))..----- ( -22.24, z-score = -1.69, R) >droSim1.chr3R 21402186 98 + 27517382 --------UUAUUUUCCUUUUGUUCGGCACUGCCAUGCACAAUUCAAUUUGGCAAAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-ACAAGUCA--UGGAAAAUAUA----- --------.((((((((.((((((.(((...))).((((((..((...((((((.............)))))))))))))).....)-)))))...--.))))))))..----- ( -23.92, z-score = -2.09, R) >droSec1.super_25 409839 98 + 827797 --------UUAUUUUCCUUUUGUUCGGCACUGCCAUGCACAAUUCAAUUUGGCAAAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-ACAAGUCA--UGGAAAAUAUA----- --------.((((((((.((((((.(((...))).((((((..((...((((((.............)))))))))))))).....)-)))))...--.))))))))..----- ( -23.92, z-score = -2.09, R) >droYak2.chr3R 4117759 98 - 28832112 --------UUAUUUUCCUAUUGCUCAGCACUGCCAUGCACAAUUCAAUUUGGCAAAAAUGCAAUCGAUGCUAAGUUGUGCAACGAAA-ACAAGUCU--UGGGAAAUAUA----- --------....(((((((..(((..(((.(((((..............)))))....)))..(((.(((........))).)))..-...)))..--)))))))....----- ( -23.44, z-score = -1.59, R) >droEre2.scaffold_4770 11463451 98 + 17746568 --------UUAUUUUCCUAUUGUUCAGCACGGCCAUGCACAAUUCAAUUUGGCAAAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-ACAAGUCA--AGGGAAAUAUA----- --------.(((((((((.(((((....(((....(((.(((......))))))....)))..(((.(((........))).))).)-))))....--)))))))))..----- ( -21.90, z-score = -1.52, R) >droAna3.scaffold_13340 8654307 111 + 23697760 --UAUUUUUUAACUCUGCCCCGUUCAGUCCUGGUUGGCACAAUUCAAUUUGGCAAAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-ACAAGCCAGUUGCGAGAGAAAAAGUA --((((((((..((((((((((........)))..)))).....(((((.(((.....(((..(((.(((........))).)))..-))).)))))))).)))..)))))))) ( -25.10, z-score = -0.83, R) >dp4.chr2 29844773 95 - 30794189 UUUUCCUGCUAUUUCUUUUCUGCAUUGUGCUGCU-UGCACAAUUCAAUUUGGC-AAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-AACAAGGAAA---------------- .((((((((((..(......((.(((((((....-.))))))).)))..))))-....(((..(((.(((........))).)))..-.)))))))))---------------- ( -23.40, z-score = -1.77, R) >droPer1.super_6 5214247 100 - 6141320 UUUUCCUGCUAUUUCUUUUCUGCAUUGUGCUGCU-UGCACAAUUCAAUUUGGC-AAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-AACAAGGAAAAUUUA----------- (((((((((((..(......((.(((((((....-.))))))).)))..))))-....(((..(((.(((........))).)))..-.))))))))))....----------- ( -24.70, z-score = -2.11, R) >droWil1.scaffold_181130 4177045 90 - 16660200 ------------UUAUUUUUUGUGCUUUUC--GU-UGCACAAUUCAAUUUGGC-AAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA-GAAGGCAAAGAGAUAGAUA------- ------------(((((((((.((((((((--((-((((((..((...(((((-(............))))))))))))))))))))-...)))))))))))))...------- ( -28.10, z-score = -4.00, R) >droMoj3.scaffold_6540 21588090 85 + 34148556 ------------UUUUUUUUUAUCCA---------AACACAAUUCAAUUUAGC-CAAAUGUAAUCGAUGCUAAAGCGUGCAACGAAAUACAUGACACAAUCAAAAUA------- ------------..............---------..................-...(((((.(((.(((........))).)))..)))))...............------- ( -8.90, z-score = -0.11, R) >consensus ________UUAUUUUCCUUUUGUUCAGCACUGCCAUGCACAAUUCAAUUUGGCAAAAAUGUAAUCGAUGCUAAGAUGUGCAACGAAA_ACAAGUCA__UGGAAAAUAUA_____ ....................................((.(((......)))))..........(((.(((........))).)))............................. ( -7.69 = -7.89 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:53 2011