| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,334,638 – 15,334,742 |
| Length | 104 |
| Max. P | 0.962951 |
| Location | 15,334,638 – 15,334,742 |
|---|---|
| Length | 104 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 58.71 |
| Shannon entropy | 0.84468 |
| G+C content | 0.50805 |
| Mean single sequence MFE | -33.10 |
| Consensus MFE | -8.08 |
| Energy contribution | -8.29 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.71 |
| SVM RNA-class probability | 0.962951 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15334638 104 - 27905053 --------CUGAAAAUGAAUUUGGAGACACGGAGAGACUUGCGAGAGACUUUUGGUGCACCUGG-GAGAGCGAAAAUCAGCCGGU--AGGUACCGUUAUU-ACCUGCCGGCAAAGU --------..............((.(.(((.(((((.(((....))).))))).)))).))...-..............((((((--(((((.......)-))))))))))..... ( -33.10, z-score = -2.53, R) >droSim1.chr3R 21376681 102 + 27517382 --------CUG-AAAUGAUUUUGGAGACCCGGAGAGACUUGCGAGAGACUCUUUG-GCACCUGG-GAGAGCGAAAAUCAGCCGGU--AGGUACCGUUAUU-ACCUGCCGGCAAAGU --------...-...(((((((.(...(((((.(.....(((.((((...)))).-))))))))-)....).)))))))((((((--(((((.......)-))))))))))..... ( -39.20, z-score = -3.88, R) >droSec1.super_25 386188 98 + 827797 --------CUG-AAAUGAUUUUGGAGACUCG----GACUUGCGAGAGACUCUUUG-GCACCUGG-GAGAGCGAAAAUCAGCCGGU--AGGAACCGUUAUU-ACCUGCCGGCAAAGU --------...-...(((((((.(...((((----(...(((.((((...)))).-))).))))-)....).)))))))((((((--(((..........-.)))))))))..... ( -34.50, z-score = -2.76, R) >droYak2.chr3R 4074171 102 - 28832112 --------CUG-AAAUGAUUUUGGAGACCCGGAGAGACUUGUGAGAGACUCUUUG-CCAGCUGG-GAGAGCGAAAAUCAGCCGGU--UGAUACCGUUAUU-ACCUGCCGGCAAAAU --------...-...(((((((.(...(((((((((.(((....))).))))...-....))))-)....).)))))))((((((--(((((....))))-)...))))))..... ( -29.61, z-score = -1.96, R) >droEre2.scaffold_4770 11439422 102 + 17746568 --------CUG-AAAUGAUUUUGGAGACUCGGAGAGACUUGCGAGAGAAUCUUUG-GCACCUGG-GAGAGCGAAAAUCAGCCGGU--UGAUACCGUUAUU-ACCUGCCGGCAAAAU --------...-...(((((((.(...(((((.(.....(((.((((...)))).-))))))))-)....).)))))))((((((--(((((....))))-)...))))))..... ( -27.10, z-score = -1.02, R) >droAna3.scaffold_13340 8632525 102 + 23697760 ---------AGUCUACUAUUGCGGGAGCAACUCUCCA-AAAUGAGAGAAUCUCAC-ACACCUGG-GAGAGGAAACAGCCGGCUCU--GCGUCCCGCUAUUAAACUACCGGCAUAAU ---------...........(((((((((.((((((.-...((((.....))))(-(....)))-)))))((..(....)..)))--)).)))))).................... ( -28.20, z-score = -1.29, R) >dp4.chr2 29813368 115 - 30794189 UUGUGACUCUCUCGGGGUCUACACAAAAAAGCUUAGAGAUGCGAGAUGCGAGAGAAAGACAAGGAGAGCGCGUAAAACAGCCGGUUAACAUAACGGCACU-ACCUGCCGGCAAAAU ..(((.((((((....((((..........((........))......(....)..))))..)))))))))........(((.((((...))))((((..-...)))))))..... ( -29.20, z-score = -0.67, R) >droPer1.super_6 5182756 115 - 6141320 UUGUGACUCUCUCGGGGUCUACACAAAAAAGCUUAGAGAUGCGAGAUGCGAGAGAAAGACAAGGAGAGCGCGUAAAACAGCCGGUUAACAUAACGGCACU-ACCUGCCGGCAAAAU ..(((.((((((....((((..........((........))......(....)..))))..)))))))))........(((.((((...))))((((..-...)))))))..... ( -29.20, z-score = -0.67, R) >droMoj3.scaffold_6540 21557502 101 + 34148556 --------CCGAGAGUCUGCUCUGUGGAGUGGAGACUUUUCGGGCGCGCGCUC---UCUCACAGUCUACACGGCAAGCAGCCGGUAAAUAUAACGGUACU----UGCCGGCAAAAU --------......(..((((.((((((.((((((......((((....))))---)))).)).)))))).))))..).((((((((.(((....))).)----)))))))..... ( -40.90, z-score = -2.92, R) >droVir3.scaffold_13047 2957430 87 + 19223366 --------CUGAGCGUGAGCUC----AAGUGGAGAGUUU-------GGCGCUC---UCUCGCAGUCUACACGG---GCUGCCGGUAAAUAUAACGGUAUU----CGCCGGCAAAAC --------.(((((....))))----).(((((((((..-------...))))---)).)))(((((....))---)))(((((..(((((....)))))----..)))))..... ( -40.00, z-score = -4.59, R) >consensus ________CUG_AAAUGAUUUCGGAGACACGGAGAGACUUGCGAGAGACUCUUUG_GCACCUGG_GAGAGCGAAAAUCAGCCGGU__AGAUACCGUUAUU_ACCUGCCGGCAAAAU ...............................................................................((((((....................))))))..... ( -8.08 = -8.29 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:49 2011