| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,307,299 – 15,307,408 |
| Length | 109 |
| Max. P | 0.685531 |
| Location | 15,307,299 – 15,307,408 |
|---|---|
| Length | 109 |
| Sequences | 13 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 65.60 |
| Shannon entropy | 0.78408 |
| G+C content | 0.49937 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -11.33 |
| Energy contribution | -11.22 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15307299 109 + 27905053 UCGAAAUGUGGAGCGAUCCACUGAGGUAGUAGAUGUCGCAUCCGCCGGACCCAACACGGUUCAGACUCAAUACCAAAAGUGUCUGGUAUGUAUAAUAUAUGCUUAAGAA- .......(((((....)))))...((((...((.(((((....)).(((((......))))).)))))..)))).......(((((((((((...))))))))..))).- ( -27.70, z-score = -0.84, R) >droSim1.chr3R 21348438 109 - 27517382 UCGAAAUGUGGAGCGAUCCACACAGGUACUAGAUGUCGCAUCCGCCGGACCCAACACGGUUCAGGCUCAAUACCAAAACUGUCUGGUAGGUACAAUAUAUUCUUAAGGA- ..(((.((((((....))))))...(((((.((((...)))).((((((((......))))).)))....(((((........))))))))))......))).......- ( -29.60, z-score = -0.99, R) >droSec1.super_25 358724 109 - 827797 UCGAAACGUGGAGCGAUCCACACAGGUACUAGAUGUCGCAUCCGCCGGCCCCAACACGGUUCAGGCUCAAUACCAAAACUGUCUGGUAGGUACAAUAUAUUCUUAAGGA- ..(((..(((((....)))))....(((((.((((...)))).((((..((......))..).)))....(((((........))))))))))......))).......- ( -25.70, z-score = 0.33, R) >droYak2.chr3R 4043059 109 + 28832112 UCGAAAUGUGGAGCGAUCCACUCUGGUACUAGAUGUCGCAUCCGCCGGACCCAAUACGGUUCAGGCUCAAUACCAAAAGUGUCUGGUAAGUAUAGUCCUUAAUAAAUAA- .......((((((((((....((((....)))).))))).))))).((((...((((...((((((.(..........).))))))...)))).))))...........- ( -29.30, z-score = -1.62, R) >droEre2.scaffold_4770 11412488 109 - 17746568 UCGGAAUGUGGAGCGCUCCACUCUGGUACUGGAUGUCGCCUCCGCCGGACCCAAUACGGUUCAGGCUCAAUACCAAAAGUGUCUGGUGAGUAAAAUGAUUACGAAAUAA- ..(((..(((((....)))))...(((((.....)).))))))((((((((......))))).)))((..(((((........))))).((((.....)))))).....- ( -29.00, z-score = -0.16, R) >droAna3.scaffold_13340 8607905 106 - 23697760 CCGGAACGUGGAACGAUCCACUCUGGUCCUGGAUGUGGCAUCAGCUGGUCCCAGUGCGGUGCAGGCCCAGUACCAGAUGUGCCUGGUAAGACGGUACUACUUUCUA---- ((((.(((((((....)))))((((((.((((.....(((((.((((....))))..)))))....)))).)))))).))..))))..(((.((.....)).))).---- ( -41.10, z-score = -1.16, R) >dp4.chr2 29777226 110 + 30794189 CAGGAACGUGGAGAGAUCUACUUUGGUGCUGGAUGUGGCUUCCGCGGGACCGAAUACGGUGCAGGCGCAGUAUCAAAAGUGUUUGGUGAGUGGAAUCAGACGUUCCCUUU ..((((((((((....)))))((((((((((..(((((...)))))(.((((....)))).).....))))))))))...(((((((.......)))))))))))).... ( -39.20, z-score = -1.86, R) >droPer1.super_6 5146920 110 + 6141320 CAGGAACGUGGAGAGAUCUACUUUGGUGCUGGAUGUGGCUUCCGCCGGACCGAAUACGGUGCAGGCGCAGUAUCAAAAGUGUUUGGUGAGUGGAAUCAGACGUUCCCUUU ..((((((((((....)))))((((((((((((.......))(((((.((((....)))).).))))))))))))))...(((((((.......)))))))))))).... ( -40.80, z-score = -2.26, R) >droWil1.scaffold_181130 4117487 92 + 16660200 GAGGAAUGUGGAACGUUCAACCUUAGUGCUAGAUGUGGCCUCGGCAGGACCCAGUUUAGUGCAAGCUCAAUAUCAAAAGUGUUUGGUAAGAG------------------ ((((((((.....)))))...(((.(..((((((..(((((....))).))..))))))..)))))))..(((((((....)))))))....------------------ ( -25.00, z-score = -0.99, R) >droMoj3.scaffold_6540 21520815 101 - 34148556 ACGCAACGUGGAGCACUCCACGCUGGUGCUGGACGUGGCCUCGGCGGGACCCAGCACGGUGCAGGCGCAGUAUCAGAAAUGCCUGGUAAGC-UAGGUAGAAG-------- ......((((((....))))))(((((((((..(((.((.(((((.(....).)).))).))..))))))))))))...(((((((....)-))))))....-------- ( -40.70, z-score = -0.71, R) >droVir3.scaffold_13047 2923729 102 - 19223366 GCGCAACGUGGAGCACUCCACAUUGGUGCUGGAUGUGGCCUCGGCGGGUCCAAGCACCGUGCAGGCGCAGUACCAAAAGUGUUUGGUAUGUUUUCAUAAAAA-------- ((((.(((((((....)))))...((((((((((.((.(....))).)))).))))))))....)))).((((((((....)))))))).............-------- ( -42.50, z-score = -2.66, R) >droGri2.scaffold_15116 621743 101 - 1808639 ACGCAACGUGGAACACUCCACAUUGGUGUUGGAUGUCGCCUCGGCGGGUCCCAGCACCGUUCAGGCCCAAUAUCAGAAGUGCUUGGUAAGCGUUCAUUAAA--------- ((((((((((((....)))))...((((((((...((((....))))...)))))))))))(((((.(..........).)))))....))))........--------- ( -36.00, z-score = -1.90, R) >apiMel3.Group1 19171277 94 + 25854376 UAGAGGAAUAGAAGAAGCAACUUGUUUAUUAGAACUGUCAUCAGAAGAUCCAGAAGCUAUUGAAGGUCAACUUAAACAUUGUCUGGUAAUAAAU---------------- .......................((((((((...(((....))).....(((((........(((.....)))........)))))))))))))---------------- ( -13.29, z-score = 0.81, R) >consensus UCGAAACGUGGAGCGAUCCACUCUGGUACUGGAUGUGGCAUCCGCCGGACCCAACACGGUUCAGGCUCAAUACCAAAAGUGUCUGGUAAGUAUAAUCAAAACU__A____ .......(((((....)))))................((....((((.........))))....))....(((((........)))))...................... (-11.33 = -11.22 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:44 2011