| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,258,318 – 15,258,413 |
| Length | 95 |
| Max. P | 0.760817 |
| Location | 15,258,318 – 15,258,413 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 60.89 |
| Shannon entropy | 0.77030 |
| G+C content | 0.40551 |
| Mean single sequence MFE | -26.99 |
| Consensus MFE | -5.57 |
| Energy contribution | -5.34 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.760817 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15258318 95 - 27905053 GGAAGU-CAUUAAAUUGAUGGAAUUUCCGGUUCCGUCUUUGACUUCCAUUCGCUGCGCUCACUUUUGGACUA-CGGUGUGGAUAUAACACCGGGAAU------------------ ((((((-((.......((((((((.....))))))))..))))))))((((.....(..((....))..)..-((((((.......)))))).))))------------------ ( -31.60, z-score = -3.04, R) >droAna3.scaffold_13340 8572374 84 + 23697760 GGAAGU-CAUUAAAUUGAUGGAGUUUCCGCUACC-----GUUGU----CCAUAUUCUUUUUUGUUGUGAGAUGGCGUG--GAAAUAAAGUAAGAAU------------------- ....((-((......))))...((((((((....-----((..(----(((((..(......).)))).))..)))))--)))))...........------------------- ( -17.80, z-score = -0.97, R) >droEre2.scaffold_4770 11373557 95 + 17746568 GGAAGU-CAUUAAAUUGAUGGAAUUUCCGCUUCCGUCUUUGACUUCCACGGCCCGCUUUCACUUUUGGGAUA-UGGUGUGGAAAUAACACCGGGAAU------------------ ((((((-((.......(((((((.......)))))))..))))))))....(((..(..((....))..)..-.(((((.......))))))))...------------------ ( -31.80, z-score = -2.58, R) >droYak2.chr3R 3995960 95 - 28832112 GGAAGU-CAUUAAAUUGAUGGAAUUUCCGCUUCCGACUUUGACUUCCAUUCCGUGCUUUCACUUUCGGGAUA-UGGUGUGGAAAUAAUACCGGGAAU------------------ ((((((-((.......(.(((((.......))))).)..))))))))((((((((....)))..........-((((((.......)))))))))))------------------ ( -24.90, z-score = -0.85, R) >droSec1.super_25 318636 95 + 827797 GGAAGU-CAUUAAAUUGAUGGAAUUUCCGGUUCCGUCUUUGACUUCCAUUCGCUGCGCUCACUUUUGGGCUA-CGGUGUGGAUAUAACACCGGGAAU------------------ ((((((-((.......((((((((.....))))))))..))))))))((((.....(((((....)))))..-((((((.......)))))).))))------------------ ( -37.10, z-score = -4.52, R) >droSim1.chr3R 21307407 95 + 27517382 GGAAGU-CAUUAAAUUGAUGGAAUUUCCGGUUCCGUCUUUGACUUCCAUUCGCUGCGCUCACUUUUGGGCUA-UGGUGUGGAUAUAACACCGGGAAU------------------ ((((((-((.......((((((((.....))))))))..))))))))((((.(...(((((....)))))..-.(((((.......)))))).))))------------------ ( -36.10, z-score = -4.23, R) >droVir3.scaffold_13047 2875897 96 + 19223366 GGAAGU-UCACAAAUUGGCGGAAUUUCCGUUUCCUGCUUUUACUCUAAU--GUCAUGUUGCCUGUCGUUUUAUUGGUUUGUUAUUAGUAAUGAAAUAAA---------------- ((((((-((.(.....)...))))))))(((((.((((...((.(((((--(..(((........)))..))))))...))....))))..)))))...---------------- ( -19.30, z-score = -1.34, R) >droMoj3.scaffold_6540 21474902 112 + 34148556 GGAAGU-CAUCAAAUUGGUGGAAUUUCCGUUUCCUGCUUUUAGUUCAAU--AUCAAGUUACAUGUCGAUUUGUUGGUUUGUCAUUCGUAACAAAAUAAAUACAAUGAACAAACAA ((((((-((((.....))))..)))))).................((((--(....(........)....)))))((((((((((.(((..........))))))).)))))).. ( -18.00, z-score = 0.24, R) >droGri2.scaffold_15116 564997 103 + 1808639 GGAAGU-CAUCAAAUUGGUGGAAUUUCCGUUUCCUGCUUUUACUAUAAU--GUCAUGUUGCUUGUCGUUUUAUUCGUUUGUCAUUGUUAAUGGGGAGAAAAAACUU--------- ((((((-((((.....))))..)))))).((((((....(((..(((((--(.((...((..((......))..))..)).)))))))))..))))))........--------- ( -17.40, z-score = 0.28, R) >droPer1.super_6 5097015 99 - 6141320 GGAAGUCCAUUAAAUUGAUGGAAUUUCCGUUUCCUCUCUGUUGCUCUCUCUCUCUCUCUCUUGCUGUGCCUUCUCUUGGGGAAAUAAAAGAGAGAGAAU---------------- (((((((((((.....))))).))))))........................((((((((((..(((..((((....))))..))).))))))))))..---------------- ( -30.90, z-score = -2.93, R) >dp4.chr2 29724263 95 - 30794189 GGAAGUCCAUUAAAUUGAUGGAAUUUCCAUUUCCCCUCUGUCGC----UCUCUCUCUCUCUUGAUGUGUCUUCUCUUGGGGAAAUAAAAGAGAGAGAAU---------------- (((((((((((.....))))).))))))................----....((((((((((..(((.(((((....))))).))).))))))))))..---------------- ( -32.00, z-score = -3.21, R) >consensus GGAAGU_CAUUAAAUUGAUGGAAUUUCCGUUUCCGUCUUUUACUUCCAUUCGUCGCGUUCACUUUCGGGCUA_UGGUGUGGAAAUAACACCGGGAAU__________________ (((((..((((.....))))...)))))....................................................................................... ( -5.57 = -5.34 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:41 2011