| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,239,265 – 15,239,345 |
| Length | 80 |
| Max. P | 0.952573 |
| Location | 15,239,265 – 15,239,345 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 69.88 |
| Shannon entropy | 0.57947 |
| G+C content | 0.40399 |
| Mean single sequence MFE | -20.68 |
| Consensus MFE | -8.03 |
| Energy contribution | -10.47 |
| Covariance contribution | 2.45 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952573 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15239265 80 + 27905053 GGGCCAAGGUGGCCGGGAAAAAGUUAA-GAUUUAGUGUUCUGCUAAGUUUUUCUGGCUUGUCUGGUUUUUAUUCAUGUUUG ((((((....(((((((((((..(..(-((........)))...)..)))))))))))....))))))............. ( -21.10, z-score = -1.71, R) >droEre2.scaffold_4770 11355301 80 - 17746568 GGGCCAAGUUGGCCAGGAAGAAGUUAG-GAUUUAGUGUUCUGUUAAGUUUUUCUGGCGUCUCUGGUUUUUAUUCAUGUUUA ((((((((...((((((((((...(((-(((.....)))))).....))))))))))..)).))))))............. ( -22.20, z-score = -2.53, R) >droYak2.chr3R 3977231 81 + 28832112 AGUCCGAAGUGGCCAGGAAAAAGUUAGUGUUUUAGAGUUCUGUUAACUUUUUCGGGCGGCUCUGGCUUUUAUUCAUGUUUG ((.(((.(((.(((..(((((((((((.....(((....)))))))))))))).))).))).))))).............. ( -23.50, z-score = -2.30, R) >droSec1.super_25 299746 80 - 827797 UGGCCAAGGUGGCCGGGAAAAAGUUAA-GAUUUAGUGUUCUGUUAAGUUUUUCUGGCUUGUCUGGUUUUUAUUCAUGUUUC .(((((....(((((((((((..(..(-((........)))...)..)))))))))))....))))).............. ( -20.80, z-score = -2.49, R) >droSim1.chr3R 21288430 80 - 27517382 UGGCCAAGGUGGCCGGGAAAAAGUUAA-GAUUUAGUGUUCUGUUAAGUUUUUCUGGCUUGUCUGGUUUUUAUUCAUGUUUC .(((((....(((((((((((..(..(-((........)))...)..)))))))))))....))))).............. ( -20.80, z-score = -2.49, R) >droMoj3.scaffold_6540 21450071 60 - 34148556 ----CAUAUUAUGCAAAUGAACGCUUG---CUUGUGAUUUCGGCAGCUGACUC-GGCUGCUAUAUUUA------------- ----((((....((((........)))---).)))).....((((((((...)-))))))).......------------- ( -15.70, z-score = -1.74, R) >consensus GGGCCAAGGUGGCCAGGAAAAAGUUAA_GAUUUAGUGUUCUGUUAAGUUUUUCUGGCUUCUCUGGUUUUUAUUCAUGUUUC .(((((....(((((((((((.......((........)).......)))))))))))....))))).............. ( -8.03 = -10.47 + 2.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:39 2011