| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,199,017 – 15,199,111 |
| Length | 94 |
| Max. P | 0.740598 |
| Location | 15,199,017 – 15,199,111 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.51 |
| Shannon entropy | 0.37796 |
| G+C content | 0.37426 |
| Mean single sequence MFE | -20.82 |
| Consensus MFE | -15.64 |
| Energy contribution | -15.45 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15199017 94 + 27905053 GCGAGCAUAAUCGGAUUUCACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGC---UCCCUGGGCC----------------------- ..((((...(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))....))---))........----------------------- ( -22.30, z-score = -1.69, R) >droSim1.chr3R 21237748 93 - 27517382 GCGAGCAUAAUCGGAUUUCACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGC---UCC-UGGGCC----------------------- ..((((...(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))....))---)).-......----------------------- ( -22.30, z-score = -1.70, R) >droSec1.super_25 258311 94 - 827797 GCGAGCAUAAUCGGAUUUCACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGC---UCCCUGGGCC----------------------- ..((((...(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))....))---))........----------------------- ( -22.30, z-score = -1.69, R) >droYak2.chr3R 3922223 94 + 28832112 CCGAGCAUAAUCGGAUUUCACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGC---UCCAUGGGCC----------------------- ((((((...(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))....))---))...))...----------------------- ( -22.60, z-score = -1.74, R) >droEre2.scaffold_4770 11310499 94 - 17746568 CCGAGCAUAAUCGGAUUUCACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGACCAUUUGUGAACCUUGAUCCUAGC---UCCUUGGGCC----------------------- ((((((...(((((..((((((((((((.((.((((..(((.....))))))).))))))...))))))))..)))))....))---))...))...----------------------- ( -22.40, z-score = -2.17, R) >droAna3.scaffold_13340 8505987 94 - 23697760 GCGAGCAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGC---UCUCGGGGCC----------------------- (.((((...(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))....))---)).)......----------------------- ( -20.70, z-score = -1.05, R) >dp4.chr2 29662223 120 + 30794189 GCGAACAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGAGGAUCCACAGUCUGCGCAAUCUGCCUCGGGUCUCUC ............((((((((((((((((.((.((((..(((.....))))))).)))))))...)))))).....)))))..((((((((...(....)((.....))...))))).))) ( -24.50, z-score = 0.00, R) >droPer1.super_6 5033071 120 + 6141320 GCGAACAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGAGGAUCCACAGUCUGCGCAAUCUGCCUCGGGUCUCUC ............((((((((((((((((.((.((((..(((.....))))))).)))))))...)))))).....)))))..((((((((...(....)((.....))...))))).))) ( -24.50, z-score = 0.00, R) >droWil1.scaffold_181130 3976901 110 + 16660200 CCGAAUAUAAUCGGAUUUAACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAUCUUUGAUCUUCAUAGAGGUCCCAGCCAACUCCUCGUUCU---------- ((((......))))......(((((((.(((.((((((....))))))..))).))))(((((....))))).))).........((((............)))).....---------- ( -21.80, z-score = -0.97, R) >droVir3.scaffold_13047 2792451 85 - 19223366 GCGCAUAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGCC----------------------------------- ..((.((..(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))..)))).----------------------------------- ( -16.60, z-score = -1.77, R) >droMoj3.scaffold_6540 21399768 85 - 34148556 GCGCACAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGCC----------------------------------- ..((.....(((((..((((((((((((.((.((((..(((.....))))))).)))))))...)))))))..)))))....)).----------------------------------- ( -15.40, z-score = -1.38, R) >droGri2.scaffold_15116 445877 85 - 1808639 GCACACAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGGUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGCC----------------------------------- ............((((((((((((((((.((.((((..(((.....))))))).)))))))...)))))).....))))).....----------------------------------- ( -14.50, z-score = -0.80, R) >consensus GCGAACAUAAUCGGAUUUUACAAAUCAUUCAUUCAAUUAUCUAAUUGAUUUGACUGAUGAUCAUUUGUGAACCUUGAUCCUAGC___UCC_UGGGCC_______________________ ............((((((((((((((((.((.((((..(((.....))))))).)))))))...)))))).....)))))........................................ (-15.64 = -15.45 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:38 2011