| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,197,581 – 15,197,635 |
| Length | 54 |
| Max. P | 0.514801 |
| Location | 15,197,581 – 15,197,635 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 93.52 |
| Shannon entropy | 0.10517 |
| G+C content | 0.31019 |
| Mean single sequence MFE | -9.52 |
| Consensus MFE | -8.55 |
| Energy contribution | -8.43 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15197581 54 + 27905053 UAAAAAGGAUUUGUCUAGGGUUAAACUUAAAUAUUUCAUUGGUUAUAUGCCAGC .......((..(((.((((......)))).)))..)).(((((.....))))). ( -9.20, z-score = -1.10, R) >droSim1.chr3R 21236381 54 - 27517382 UAAAAAGGAUUUGUCUAGGGUUAAACUUAAAUAUUUCACUGGUUAUAUGCCAGC .......((..(((.((((......)))).)))..)).(((((.....))))). ( -11.30, z-score = -1.86, R) >droSec1.super_25 256944 54 - 827797 UAAAAAGGAUUUGUCUAGGGUUAAACUUAAAUAUUUCACUGGUUAUAUGCCAGC .......((..(((.((((......)))).)))..)).(((((.....))))). ( -11.30, z-score = -1.86, R) >droEre2.scaffold_4770 11309193 54 - 17746568 UUAAAACGAUAUCUCUAGGGUUAAACUUAAAUAUUUCGCUGGUUAUAUGUCAGC .......(((((..((((.(................).))))....)))))... ( -6.29, z-score = -0.37, R) >consensus UAAAAAGGAUUUGUCUAGGGUUAAACUUAAAUAUUUCACUGGUUAUAUGCCAGC .......((..(((.((((......)))).)))..)).(((((.....))))). ( -8.55 = -8.43 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:37 2011