| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,162,228 – 15,162,325 |
| Length | 97 |
| Max. P | 0.917443 |
| Location | 15,162,228 – 15,162,325 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 75.11 |
| Shannon entropy | 0.54953 |
| G+C content | 0.35376 |
| Mean single sequence MFE | -22.65 |
| Consensus MFE | -11.79 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15162228 97 + 27905053 UAAUUACAAGGAUAAUCGCCUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCGCUUUG-------AAUUUCCUGAAGUGGAUC-AUCGAUCGAUCG--CUUGAGU ..((((((.(((((((((......)))))))))....))))))..(((((..(((..(((-------(...(((......)))..-.)))).)))...--.))))). ( -22.20, z-score = -0.99, R) >droSim1.chr3R 21197762 97 - 27517382 UAAUUACAAGGAUAAUCGCCUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCGCUUUG-------AGUUUCAUGAAGUGGAUC-AUCGAUCGAUCG--CUUGAGU ......(((((((.......((((((((.((((((((((.((...(((((.......)))-------)).)))))))..))))).-))))))))))).--))))... ( -23.71, z-score = -1.29, R) >droSec1.super_25 221727 97 - 827797 UAAUUACAAGGAUAAUCGCCUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCGCUUUG-------AAUUUCCUGAAGUGGAUC-AUCGAUCGAUCG--CUUGAGU ..((((((.(((((((((......)))))))))....))))))..(((((..(((..(((-------(...(((......)))..-.)))).)))...--.))))). ( -22.20, z-score = -0.99, R) >droYak2.chr3R 3881138 97 + 28832112 UAAUUACAAGGAUAAUCGCCUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCCCUUUG-------AAUUUUCUGAAGUGGAUC-AUCGAUCGAUCG--CUUGAGU ..((((((.(((((((((......)))))))))....))))))..(((((.......)))-------))....((.(((((.(((-.......)))))--))).)). ( -21.80, z-score = -1.13, R) >droEre2.scaffold_4770 11274202 97 - 17746568 UAAUUACAAGGAUAAUCGCCUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCCCUUUG-------AAUUCUCUGAAGUGGAUC-UUCGAUCGAUCG--CUUGAGU ..((((((.(((((((((......)))))))))....))))))..(((((.......)))-------))....((.(((((.(((-.......)))))--))).)). ( -21.70, z-score = -1.13, R) >droAna3.scaffold_13340 8470413 87 - 23697760 UAAUUACAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUAUUCAUUU--------------CCAUAGCUAGCA----AAUCGAAUG--CUUGAGU ..((((((.(((((((((......)))))))))....))))))..((((((((((((((--------------.(.......).)----))).)))))--.))))). ( -17.20, z-score = -1.54, R) >dp4.chr2 29620758 101 + 30794189 UAAUUACAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCCAUUUGUCG----AGGAGUCUGAAGUGGAUCGAUGGCUCGAUCG--CUUGAGU .........(((((((((......))))))))).(((.((..(((((((..((((........----.))))..)))))))((((((....)))))))--).))).. ( -28.40, z-score = -1.81, R) >droPer1.super_6 4992851 101 + 6141320 UAAUUACAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCCAUUUGUCG----AGGAGUCUGAAGUGGAUCGAUGGCUCGAUCG--CUUGAGU .........(((((((((......))))))))).(((.((..(((((((..((((........----.))))..)))))))((((((....)))))))--).))).. ( -28.40, z-score = -1.81, R) >droWil1.scaffold_181130 3909406 107 + 16660200 UAAUUAUAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUUCAACUUGAAUCUUGGGUUUUCUUUCUCAUCAACCAAAGUGACUGUACUUGAGU .........(((((((((......))))))))).(((.(((......(((..(((.....)))..)))((((..((((..........)))).)))).))).))).. ( -17.60, z-score = -0.10, R) >droVir3.scaffold_13047 2749208 99 - 19223366 UAAUUAUAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUCGGGCUCUC------AGGUCGCAGCUCAAGCUGCUUCUGCCUACUG--CUUGAGU ..((((((.(((((((((......)))))))))....))))))......((((((((....------((((.(((((....)))))....))))...)--))))))) ( -30.20, z-score = -2.93, R) >droMoj3.scaffold_6540 21356940 79 - 34148556 UAAUUAUAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUC--------------------------AAGCUGCUUUCUUCUGCUA--CUUGAGU ..((((((.(((((((((......)))))))))....))))))......((((--------------------------(((..((........))..--))))))) ( -19.10, z-score = -3.04, R) >droGri2.scaffold_15116 395791 91 - 1808639 UAAUUAUAAGGAUAAUCGCUCGAUUGGUUAUCCAUCAUGUAAUAUCUCAAUUGGGUUUCUC------AG-------UUGAAACUACAUUU-UCUACUG--CUUGAGU .........(((((((((......)))))))))...(((((.....(((((((((...)))------))-------))))...)))))..-.......--....... ( -19.30, z-score = -1.88, R) >consensus UAAUUACAAGGAUAAUCGCUUGAUUGGUUAUCCAUCAUGUAAUAUUUCAAUUUCCCUUUG_______AGUUUUCUGAAGUGGAUC_AUCGAUCGAUCG__CUUGAGU ..((((((.(((((((((......)))))))))....))))))................................................................ (-11.79 = -11.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:33 2011