| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,161,540 – 15,161,686 |
| Length | 146 |
| Max. P | 0.704225 |
| Location | 15,161,540 – 15,161,686 |
|---|---|
| Length | 146 |
| Sequences | 5 |
| Columns | 146 |
| Reading direction | reverse |
| Mean pairwise identity | 77.19 |
| Shannon entropy | 0.41415 |
| G+C content | 0.31032 |
| Mean single sequence MFE | -30.31 |
| Consensus MFE | -13.68 |
| Energy contribution | -15.56 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15161540 146 - 27905053 AACAUUUAAAGAACUGAAUACUGUAACUACAGUUUUAGAUUUGGUUACAUAUGGCCAAUUACAAAGUUCCACCUUUGACAAGCUAUUUUCCAAGGUGGUCCUUUAAUGUAUCAAUUAAUGAAGAACACUUCAUUUUUAGCUGUCAA .(((.(((((((.(((((.(((((....))))))))))..(((((((....))))))).(((((((..(((((((.((.((....)).)).)))))))..)))...))))))....(((((((....)))))))))))).)))... ( -34.70, z-score = -2.80, R) >droEre2.scaffold_4770 11273546 112 + 17746568 ------------------------------AACAUUUAA---AAAUGCAGAUGGCAAACUAAAGAGUUCCAUCUUUGACAAGCAAUUUUCGAAGGUGGUCCU-UAAUGCAUCAAUUAAUGAAGAUCACUUCAUUUAUAGCUGUCAA ------------------------------.........---.......((((((........(((..((((((((((.((....)).))))))))))..))-)............(((((((....)))))))....)))))).. ( -30.20, z-score = -3.63, R) >droYak2.chr3R 3880425 146 - 28832112 UACAUUUAAAGAACAAUAUACUGUACGUUCAGCUUUAGAUUUGGUUACAGAUGACAAACUACAAAGUUCUACAUUUGACAAGCUAGUUUCAAAGGUGGUCUUGUGAUGUAUAAAUUAAUAAAGAUCACUCCAUUAAUAGCUGUCAA .........(((((......(((......)))......(((((....))))).............)))))....((((((.((((........(((((((((.((((......))))...))))))))).......)))))))))) ( -32.06, z-score = -1.67, R) >droSec1.super_25 221035 145 + 827797 AACAUUUAAAGAACUGAAGACUGGAACUACAGUUUUAGAUUUAGUUACAUAUGGCCAAUUAUAAAUUUCCACCUUU-UCAAGUUAUUUUCCAAGGUGGUCCUUUAAUGUAUCAAUUAAUGAAGAACACUUCAUUUAUCGCUGUCAA .(((((.(((((((((((..(((((((....))))))).)))))))......................(((((((.-..(((....)))..)))))))..))))))))).......(((((((....)))))))............ ( -29.00, z-score = -1.63, R) >droSim1.chr3R 21197107 146 + 27517382 AACAUUUAAAGAACUGAAUACUGUAACUACAGUUUUAGAUUUAGUUACAUAUGGCCAAUUAUAAAUUUCCACCUUUGACAAGCUAUUUUCCAAGGUGGUCCUUUAAUGUAUCAAUUAAUGAAGAACACUUAAUUUAUCGCUGUCAA ...........((((((((.(((.(((....))).))))))))))).....((((.....(((((((.(((((((.((.((....)).)).)))))))..(((((.((.......)).))))).......)))))))....)))). ( -25.60, z-score = -0.99, R) >consensus AACAUUUAAAGAACUGAAUACUGUAACUACAGUUUUAGAUUUAGUUACAUAUGGCCAAUUACAAAGUUCCACCUUUGACAAGCUAUUUUCCAAGGUGGUCCUUUAAUGUAUCAAUUAAUGAAGAACACUUCAUUUAUAGCUGUCAA ...................................................((((......(((((..(((((((.((.((....)).)).)))))))..)))))...........(((((((....))))))).......)))). (-13.68 = -15.56 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:33 2011