| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,151,730 – 15,151,832 |
| Length | 102 |
| Max. P | 0.993035 |
| Location | 15,151,730 – 15,151,832 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 95.88 |
| Shannon entropy | 0.07322 |
| G+C content | 0.43529 |
| Mean single sequence MFE | -30.94 |
| Consensus MFE | -28.74 |
| Energy contribution | -29.38 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.58 |
| SVM RNA-class probability | 0.993035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15151730 102 + 27905053 UCUUUUGGUACAUUCAAAUAUCGAAUGAGAACUGCCCAGAGUCGCGGUAAUCUGCAAUUCUUAAGUGAACUAUUGCAUUGGCAGUUCGCGUCACACACCGAA ...((((((.(((((.......))))).((((((((.(((((.((((....)))).)))))...(..(....)..)...)))))))).........)))))) ( -31.50, z-score = -3.14, R) >droSim1.chr3R 21187125 102 - 27517382 UCUUUUGGUACAUUCAAACUUCGAAUGAGAACUGCCCAGAGUCGCGGUAAUCUGCAAUUCUUAAGUGAACUAUUGCAUUGGCAGUUCGCGUCACACACCGAA ...((((((.(((((.......))))).((((((((.(((((.((((....)))).)))))...(..(....)..)...)))))))).........)))))) ( -31.50, z-score = -2.99, R) >droSec1.super_25 211300 102 - 827797 UCUUUUGGUACAUUCAAACUUCGAAUGAGAACUGCCCAGAGUCGCGGUAAUCUGCAAUUCUUAAGUGAACUAUUGCAUUGGCAGUUCGCGUCACACACCGAA ...((((((.(((((.......))))).((((((((.(((((.((((....)))).)))))...(..(....)..)...)))))))).........)))))) ( -31.50, z-score = -2.99, R) >droYak2.chr3R 3870945 102 + 28832112 GCUUUUCAAACAUUCAAAUUUCGAAUGAGAACUGCCCAGAGUCGCGGUAAUCUGCAAUUCUUAAGAGAACUAUCGCAUUGGCAGUUCGCGUUACACACCGAA ((........(((((.......))))).((((((((.(((((.((((....)))).)))))...((......)).....))))))))))............. ( -28.30, z-score = -2.63, R) >droEre2.scaffold_4770 11264510 102 - 17746568 UCUUUUGGUACAUUCAAAUUUCGAAUGAGAACUGCCCAGAGUCGCGGUAAACUGCAAUUCUUAAGUGAACUAUUGCAUUGGCAGUUCGCGUCACACACCGAA ...((((((.(((((.......))))).((((((((.(((((.((((....)))).)))))...(..(....)..)...)))))))).........)))))) ( -31.90, z-score = -3.22, R) >consensus UCUUUUGGUACAUUCAAAUUUCGAAUGAGAACUGCCCAGAGUCGCGGUAAUCUGCAAUUCUUAAGUGAACUAUUGCAUUGGCAGUUCGCGUCACACACCGAA ...((((((.(((((.......))))).((((((((.(((((.((((....)))).)))))...((((....))))...)))))))).........)))))) (-28.74 = -29.38 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:29 2011