| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,130,482 – 15,130,591 |
| Length | 109 |
| Max. P | 0.576300 |
| Location | 15,130,482 – 15,130,591 |
|---|---|
| Length | 109 |
| Sequences | 7 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 64.76 |
| Shannon entropy | 0.66252 |
| G+C content | 0.52859 |
| Mean single sequence MFE | -32.23 |
| Consensus MFE | -10.55 |
| Energy contribution | -11.14 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.576300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15130482 109 - 27905053 CAACAGCAGCGAUCCGUGGUCUGCGGCACUCCGCAUAUGUAACUCCAAAAAUCCGGAAGGGCUCCUGGGAAAUCCGG----------AGAAAUCCGCAUGGAGGAGCUGACAGCACACA .....(((((..((((((((.(((((....))))).)).....((((..(..((....))..)..)))).....(((----------(....))))))))))...)))).)........ ( -36.90, z-score = -1.30, R) >droWil1.scaffold_181130 3875735 90 - 16660200 ------CAACGCUCUGUGGUCUGUGGUACGCCGCAUAUGUAAA---AAGACAACAAAAACCACUAAACACAAACAGAUCUAA---AGACUGGGUUGCAGAGA----------------- ------.....((((((..(((((((....)))))........---...........................(((.((...---.)))))))..)))))).----------------- ( -20.80, z-score = -1.25, R) >droAna3.scaffold_13340 8440963 94 + 23697760 CAACAACAGCGGUCCGUCGUCUGCGGAACUCCGCACAUGUAACUCCCCAAAACCGGAGGAGAUCUCGAG-AAUCUGUUGAAGC---UAACAGCACACA--------------------- ...((((((...((((.(((.(((((....))))).)))...((((((......)).))))....)).)-)..))))))..((---.....)).....--------------------- ( -28.70, z-score = -2.20, R) >droEre2.scaffold_4770 11243801 119 + 17746568 CAGCAGCAGCGAUCCGUGGUUUGCGGCACUCCGCAUAUGUAACUCCAAGAAUCCGGAAGGGUUCCUGGGAAAUCCGGAGAAAUCCGUAGAAAUCCGUAUGGAGGAGCUGAUAGCACACA ..((..((((..((((((((.(((((....))))).)).....((((.((((((....)))))).)))).....((((....))))..........))))))...))))...))..... ( -44.30, z-score = -2.77, R) >droYak2.chr3R 3849498 84 - 28832112 CAACAACAGCGAUCCGUGGUCUGCGGCACUCCGCAUAUGUAACUCCAAAAAUCCGGAAA---UCCUGGGAAAUCCG-----------GGCAGCACACA--------------------- ...............(((..((((.((.....))..................(((((..---((....))..))))-----------)))))..))).--------------------- ( -21.40, z-score = -0.50, R) >droSec1.super_25 190165 109 + 827797 CAACAGCAGCGAUCCGUGGUCUGCGGCACUCCGCAUAUGUAACUCCAAAAAUCCGGAAGGGCUCCUGGGAAAUCCGG----------AGAAAUCCGCAUGGAGGAGCUGACAGCACACA .....(((((..((((((((.(((((....))))).)).....((((..(..((....))..)..)))).....(((----------(....))))))))))...)))).)........ ( -36.90, z-score = -1.30, R) >droSim1.chr3R 21165846 109 + 27517382 CAACAGCAGCGAUCCGUGGUCUGCGGCACUCCGCAUAUGUAAAUCCAAAAAUCCGGAUGGGCUCCUGGGAAAUCCGG----------AGAAAUCCGCAUGGAGGAGCUGACAGCACACA .....(((((..((((((((.(((((....))))).))...............(((((...((((.((.....))))----------))..)))))))))))...)))).)........ ( -36.60, z-score = -1.18, R) >consensus CAACAGCAGCGAUCCGUGGUCUGCGGCACUCCGCAUAUGUAACUCCAAAAAUCCGGAAGGGCUCCUGGGAAAUCCGG__________AGAAAUCCGCAUGGAGGAGCUGA_AGCACACA ...............((((..(((((....)))))................(((((........)))))........................))))...................... (-10.55 = -11.14 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:27 2011