| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,127,513 – 15,127,611 |
| Length | 98 |
| Max. P | 0.678547 |
| Location | 15,127,513 – 15,127,611 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 68.24 |
| Shannon entropy | 0.67167 |
| G+C content | 0.39257 |
| Mean single sequence MFE | -24.45 |
| Consensus MFE | -10.60 |
| Energy contribution | -10.21 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15127513 98 + 27905053 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGUUCU--GCAGCUCCACUCGCCACGCAG-CGCGCGUUG-----AGUGCG--------- .............(((((((((...)))))))))((.(((.((((((((....))).)))))--)))))..((((((..((((..-...))))))-----))))..--------- ( -25.70, z-score = -0.43, R) >droSim1.chr3R 21162951 105 - 27517382 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGUUCUCUGCAGCUUCACUCGCCACGCAG-CGCGCGUUGCGUUGAGUGCG--------- .............(((((((((...)))))))))((.((((((((((((....))).)))))).)))))..((((((..((((((-(....)))))))))))))..--------- ( -33.90, z-score = -1.99, R) >droSec1.super_25 187205 105 - 827797 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUCGUUAAUGUUCUCUGCAGCUUCACUCGCCACGCAG-CGCGCGUUGCGUUGAGUGCG--------- .............(((((((((...)))))))))((.((((((((((((....))).)))))).)))))..((((((..((((((-(....)))))))))))))..--------- ( -33.90, z-score = -1.87, R) >droYak2.chr3R 3846533 96 + 28832112 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGUUCU--CCAGCUUCACUCGCAACGU---UGCGCGUUG-----AGUGCG--------- ........(((.((((((((((...)))))))))))))(((((((((((....))).)))))--)..((((.((.((((....---)))).)).)-----))))).--------- ( -25.50, z-score = -1.46, R) >droEre2.scaffold_4770 11240965 79 - 17746568 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUUGAGCUCU--GCAGCUUCACUCGU-GCG--------------------------------- .......(((((.(((((((((...)))))))))((.(((.(((.((((.....)))).)))--))))).....))))-)..--------------------------------- ( -16.60, z-score = -0.22, R) >droAna3.scaffold_13340 8438234 99 - 23697760 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCAAGAAUUUAUUGUUAAUGCUCUGUUGCCCUCCUCACCGAUUUU-GCGGUGUGUUGUGAGA--------------- ........................(((((((((((((.(((..(((.....)))..))).....)))).....(((((.....-.))))).)))))))))--------------- ( -22.80, z-score = -1.38, R) >dp4.chr2 29583531 109 + 30794189 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGCU-CUCUGCACCUCAUUCGCUCUA----UCUAUGUCGCUGU-UUCGCUCUCUCUAGC ........(((.((((((((((...)))))))))))))((((((............(((.-....)))........((....----........))..)-))))).......... ( -18.00, z-score = 0.48, R) >droPer1.super_6 4955667 109 + 6141320 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGCU-CUCUGCACCUCAUUCGCUCUA----UCUAUGUCGCUGU-UUCGCUCUUUCUAGC ........(((.((((((((((...)))))))))))))((((((............(((.-....)))........((....----........))..)-))))).......... ( -18.00, z-score = 0.44, R) >droWil1.scaffold_181130 3872451 114 + 16660200 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGUGGCUCUCUACUUCUCUAGCUCUGGGGCUCUGUGCGGUGUC-UCUGCGUUGUGUUUU .......((((.((((((((((...)))))))))))))).(((((.(((....))).((((....)))))))))..((...(((((.((....)).)))-)).)).......... ( -23.70, z-score = 0.15, R) >droVir3.scaffold_13047 2712024 86 - 19223366 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGCUUUGUUGCAGCGACCAGAGACUGCGGC----------------------------- .............(((((((((...)))))))))((((((((.......))))..))))...((((((((.......).)))))))----------------------------- ( -19.00, z-score = -0.78, R) >droMoj3.scaffold_6540 21318701 103 - 34148556 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGCUUUGUUGCAGCCACCACAGGCUGCGGCUGAGCAGCCUGAGAGAC------------ ..............((((((((...))))))))(((..((((.......))))...(((((.(((((((((......))))))))).))))))))........------------ ( -34.20, z-score = -3.47, R) >droGri2.scaffold_15116 356708 86 - 1808639 UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGCUUUGUUGCUGGAGCGACUG-CAGCAGCC---------------------------- .............(((((((((...)))))))))((((((((.......))))..))))...(((((((.((...)).-))))))).---------------------------- ( -22.10, z-score = -1.44, R) >consensus UAUUAUUUAUGAUUAUUGUGAGAAUUUCACAAUGGCAUGCGAGAAUUUAUUGUUAAUGCUCUGUUCCACUUCACUCGCACUGC_G_UGCGCGUUG_______UGC__________ .............(((((((((...)))))))))((((((((.......))))..))))........................................................ (-10.60 = -10.21 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:26 2011