| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,123,420 – 15,123,477 |
| Length | 57 |
| Max. P | 0.814948 |
| Location | 15,123,420 – 15,123,477 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 80.12 |
| Shannon entropy | 0.38100 |
| G+C content | 0.48544 |
| Mean single sequence MFE | -7.60 |
| Consensus MFE | -4.95 |
| Energy contribution | -5.78 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814948 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15123420 57 - 27905053 UCCCAUUACCAAGCCAA-UGUGCCACAUUUCCACAUUCACAAAGGAACCCGAGCACAA .................-(((((.....((((...........)))).....))))). ( -8.70, z-score = -2.56, R) >droEre2.scaffold_4770 11236909 57 + 17746568 UCCCAGUACCACGCCAA-CGUGCCACAUUUCCACAUGCACAAAGGAACCCGAGCACAA .................-.((((.....((((...........)))).....)))).. ( -8.00, z-score = -0.89, R) >droYak2.chr3R 3835489 57 - 28832112 UCCCAGUAUCACGCCAA-CGUGCCACAUUUCCACAUUCACAAAGGAACCCGAGCACAA .................-.((((.....((((...........)))).....)))).. ( -8.00, z-score = -1.77, R) >droSec1.super_25 183519 57 + 827797 UCCCAUUACCAAGCCAA-CGUGCCACAUUUCCACAUUCACAAAGGAACCCGAGCACAA .................-.((((.....((((...........)))).....)))).. ( -8.00, z-score = -2.76, R) >droSim1.chr3R 21158915 57 + 27517382 UCCCAUUACCAAGCCAA-CGUGCCACAUUUCCACAUUCACAAAGGAACCCGAGCACAA .................-.((((.....((((...........)))).....)))).. ( -8.00, z-score = -2.76, R) >droGri2.scaffold_15116 348773 52 + 1808639 -UGUAAU-CUAAGCCAAUUAUGCCACA----CAAUGCCAAAACAACAGUUAGGCACGA -......-...................----...((((..(((....))).))))... ( -4.90, z-score = 0.69, R) >consensus UCCCAUUACCAAGCCAA_CGUGCCACAUUUCCACAUUCACAAAGGAACCCGAGCACAA ...................((((.....((((...........)))).....)))).. ( -4.95 = -5.78 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:25 2011