| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,102,025 – 15,102,120 |
| Length | 95 |
| Max. P | 0.653610 |
| Location | 15,102,025 – 15,102,120 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 66.72 |
| Shannon entropy | 0.46761 |
| G+C content | 0.55717 |
| Mean single sequence MFE | -23.70 |
| Consensus MFE | -14.41 |
| Energy contribution | -14.98 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.653610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15102025 95 - 27905053 ---------------------ACUCCUCCCGCCCCAGCGGAACCGUAUCCCCCCCCACCCGCCUGUGUUCGAUGUGUUGAUCUUCAGAUUAACAGGCAGCAGCGGAGCCAGCAGGC ---------------------.......((((....))))....................((((((((((....((((((((....)))))))).((....)).))))..)))))) ( -27.50, z-score = -1.05, R) >droYak2.chr3R 3812756 82 - 28832112 ---------------------ACUCCUCCCUCCCCAGAGGAACCGAAUCCCC-------------UGUUCGAUGUGUUGAUCUUCAGAUUAGCAGGCAGCAGCAGAGCCAGCAGGC ---------------------..(((((........))))).........((-------------((((.....((((((((....))))))))(((.........))))))))). ( -23.90, z-score = -0.98, R) >droEre2.scaffold_4770 11216013 82 + 17746568 ---------------------ACUGCCCCCUCCCCAGAGGAGCCGAGUCCCC-------------UGCCCGAUGUGUUGAUCUUCAGAUUAACAGGCAGCAGCAGAGCCAGCAGGC ---------------------.((((..((((....))))...........(-------------((((.....((((((((....)))))))))))))..)))).(((....))) ( -27.20, z-score = -1.88, R) >droAna3.scaffold_13340 8413386 102 + 23697760 UUACCUAUAACCCAGAAGAGAACAAAAAAAAAAACAAAAAUACCAAACCCCU-----------UGUGUUCGAUGUGUUGAUCUUGAGAUUAACAGGCAGCAG---AGCCAGCAGGC ...(((.............(((((............................-----------..)))))....((((((((....))))))))(((.....---.)))...))). ( -16.21, z-score = -0.74, R) >consensus _____________________ACUCCUCCCUCCCCAGAGGAACCGAAUCCCC_____________UGUUCGAUGUGUUGAUCUUCAGAUUAACAGGCAGCAGCAGAGCCAGCAGGC ............................((((....))))..((..............................((((((((....))))))))(((.........)))....)). (-14.41 = -14.98 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:19 2011