Locus 10614

Sequence ID dm3.chr3R
Location 15,080,491 – 15,080,542
Length 51
Max. P 0.742537
window14593

overview

Window 3

Location 15,080,491 – 15,080,542
Length 51
Sequences 6
Columns 51
Reading direction forward
Mean pairwise identity 77.12
Shannon entropy 0.43950
G+C content 0.35725
Mean single sequence MFE -9.37
Consensus MFE -6.27
Energy contribution -6.17
Covariance contribution -0.11
Combinations/Pair 1.44
Mean z-score -1.21
Structure conservation index 0.67
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.56
SVM RNA-class probability 0.742537
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 15080491 51 + 27905053
AACUGGUUAGCUUCCAGAGGCUAAGCCAUAAAUAUUUACUUCAUUGACCUC
...((((((((((....))))).)))))....................... ( -10.00, z-score =  -1.25, R)
>droEre2.scaffold_4770 11195107 50 - 17746568
AACUGGUUAGCUUUCAUAGGCUA-GCCAUAAAUAUUUAUUUUAUUGACCUC
...((((((((((....))))))-))))....................... ( -13.40, z-score =  -3.32, R)
>droYak2.chr3R 3784539 51 + 28832112
AACUGGUUGGCUUUCAUAGGCUAAGCCAUAAAUAUUUAUUUUACGGACCUC
...((((((((((....))))).)))))....................... (  -9.30, z-score =  -0.89, R)
>droSec1.super_25 141392 51 - 827797
AACGGGUUAGCUUCCAUAGGCUUAGCCAUAAAUAUUUACUUUAUUGACCUC
....((((((((......))).)))))........................ (  -8.40, z-score =  -0.62, R)
>droSim1.chr3R 21116080 51 - 27517382
AACUGGUUAGCUCCCAUGGGCUAAGCCAUAAAUAUUUACUUUAUUGACCUC
...((((((((((....))))).)))))....................... ( -10.50, z-score =  -1.19, R)
>droVir3.scaffold_13047 2658848 51 - 19223366
AACGGAGUAAGAUCAAUAGAUAAAUCCACUAUAAAUGCAUUCUUUGAUAUC
...(((.....(((....)))...)))........................ (  -4.60, z-score =  -0.01, R)
>consensus
AACUGGUUAGCUUCCAUAGGCUAAGCCAUAAAUAUUUACUUUAUUGACCUC
....(((((((((....))))).))))........................ ( -6.27 =  -6.17 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:15 2011