| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,047,504 – 15,047,594 |
| Length | 90 |
| Max. P | 0.627211 |
| Location | 15,047,504 – 15,047,594 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 89.35 |
| Shannon entropy | 0.18511 |
| G+C content | 0.34388 |
| Mean single sequence MFE | -10.62 |
| Consensus MFE | -9.20 |
| Energy contribution | -9.48 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15047504 90 - 27905053 CACACACCACAAGAGCUCAAAUCGUUCCUCUUGAUUAUGCAAUGAUUAAGUAAAGUUCCGAAUAACUUCAUUAACAAUUAAACACCGCAA .........((((((..(.....)...))))))....(((..((.((((.(((((((......))))...)))....)))).))..))). ( -8.90, z-score = -0.44, R) >droEre2.scaffold_4770 11162096 86 + 17746568 ----CACCCCAAAAGCUGAAAUCGUUCCUCUUGAUUAUGCAAUGAUUAACUGAAGUUCCAAAUAACUUCAUUAACAAUUAAACACCGCAG ----..........((...(((((.......)))))..))..((.((((.(((((((......))))))))))))).............. ( -10.70, z-score = -1.81, R) >droYak2.chr3R 3749068 86 - 28832112 ----CACUCCAAAAGCUUAAAUCAUUCCUCUUGAUUAUGUAAUGAUUAAGUGAAGUUCCAAAUAACUUCAUUAACAAUUAAACACCGAAA ----..........((((((.(((((.(..........).)))))))))))((((((......))))))..................... ( -11.20, z-score = -1.99, R) >droSec1.super_25 109469 90 + 827797 CACACACCCCAAGAGCUUAAAUCGUUCCUCUUGAUUAUGCAAUGAUUAAGUAAAGUUCCGAAUAACUUCAUUAACAAUUAAACAGCGCAA .........((((((............))))))....(((..((.((((.(((((((......))))...)))....)))).))..))). ( -9.40, z-score = -0.37, R) >droSim1.chr3R 21083059 84 + 27517382 --CACACCC----AGCUUAAAUCGUUCCUCUUGAUUAUGCAAUGAUUAAGUGAAGUUCCGAAUAACUUCAUUAACAAUUAAACACCGCAA --.......----.((...(((((((.(..........).))))))).(((((((((......)))))))))..............)).. ( -12.90, z-score = -2.21, R) >consensus __CACACCCCAAAAGCUUAAAUCGUUCCUCUUGAUUAUGCAAUGAUUAAGUGAAGUUCCGAAUAACUUCAUUAACAAUUAAACACCGCAA ..............((...(((((.......)))))..))..(((((.(((((((((......)))))))))...))))).......... ( -9.20 = -9.48 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:13 2011