| Sequence ID | dm3.chr3R |
|---|---|
| Location | 15,045,588 – 15,045,682 |
| Length | 94 |
| Max. P | 0.781376 |
| Location | 15,045,588 – 15,045,682 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 77.99 |
| Shannon entropy | 0.29040 |
| G+C content | 0.32353 |
| Mean single sequence MFE | -16.17 |
| Consensus MFE | -12.31 |
| Energy contribution | -12.10 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.781376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 15045588 94 + 27905053 GCGGUAUUCAGACUACGUUUUAGUAGUAAAUAUGCCAGUGUCUUUUGUGCAAAUAAAUUAAAUAUGCAUUCAGAAACAAUAAAUGUCACCCACU ..(((((....(((((......)))))....))))).((.(((...(((((.((.......)).)))))..))).))................. ( -19.50, z-score = -2.10, R) >droSec1.super_25 107640 76 - 827797 GCGUUAUUCAGACUACGUUUCAGUAGUAA----GCCAGUGUUUCUUAUGCAAAUAAAUGAAAUAUGUAUUCAGAAACAAU-------------- ...........(((((......)))))..----.....(((((((.(((((.((.......)).)))))..)))))))..-------------- ( -13.80, z-score = -1.64, R) >droSim1.chr3R 21081202 80 - 27517382 GCGUUAUUCAGCUUACUCUUCAGUAGUAAUUAUGCCAGUGUUUCUUGUGCAAAUAAAUGAAAUAUGCAUUCAGAAACAAU-------------- ((((.(((..(((.(((....))))))))).))))...(((((((.(((((.((.......)).)))))..)))))))..-------------- ( -15.20, z-score = -1.24, R) >consensus GCGUUAUUCAGACUACGUUUCAGUAGUAA_UAUGCCAGUGUUUCUUGUGCAAAUAAAUGAAAUAUGCAUUCAGAAACAAU______________ ...........(((((......)))))...........(((((((.(((((.((.......)).)))))..)))))))................ (-12.31 = -12.10 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:12 2011