Locus 10608

Sequence ID dm3.chr3R
Location 15,024,111 – 15,024,175
Length 64
Max. P 0.524242
window14586

overview

Window 6

Location 15,024,111 – 15,024,175
Length 64
Sequences 6
Columns 64
Reading direction forward
Mean pairwise identity 92.81
Shannon entropy 0.14144
G+C content 0.33854
Mean single sequence MFE -10.55
Consensus MFE -8.43
Energy contribution -8.71
Covariance contribution 0.28
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.06
SVM RNA-class probability 0.524242
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 15024111 64 + 27905053
AGUCGAAAUCAAGUUUGAAGUAAUCCCAUUAAAUUUUCAGCAGUUGGUUUUAACUUCUGCCAUC
(((..(((((((.(((((((..............)))))).).)))))))..)))......... ( -10.84, z-score =  -1.98, R)
>droAna3.scaffold_13340 8335211 64 - 23697760
AGUCAAACUCAAGUUUCAAGUAAUCCCAUUAAAUUUUCAGUAGUUGAGCUUAACUUUGGCUAUA
(((((((.(.(((((.(((.((..................)).)))))))).).)))))))... (  -9.37, z-score =  -1.25, R)
>droEre2.scaffold_4770 11137537 64 - 17746568
AGUCGAAAUCAAGUUUGAAGUAAUCCCAUUAAAUUUUCAGCAGUUGCUUUUAACUUCUGCCAUC
..........(((((.((((((((..(............)..)))))))).)))))........ (  -7.80, z-score =  -0.82, R)
>droYak2.chr3R 3712873 64 + 28832112
AGUCGAAAUCAAGUUUGAAGUAAUCCCAUUAAAUUUUCAGCAGUUGGUUUUAACUUCUGCCAUC
(((..(((((((.(((((((..............)))))).).)))))))..)))......... ( -10.84, z-score =  -1.98, R)
>droSec1.super_25 86556 64 - 827797
AGUCGAAAUCAAGUUGGAAGUAAUACCAUUAAAUUUUCAGCAGUUGGUUUUAACUUCUGCCAUC
(((..((((((((((((((((...........)))))))))..)))))))..)))......... ( -13.60, z-score =  -2.49, R)
>droSim1.chr3R 21059604 64 - 27517382
AGUCGAAAUCAAGUUUGAAGUAAUCCCAUUAAAUUUUCAGCAGUUGGUUUUAACUUCUGCCAUC
(((..(((((((.(((((((..............)))))).).)))))))..)))......... ( -10.84, z-score =  -1.98, R)
>consensus
AGUCGAAAUCAAGUUUGAAGUAAUCCCAUUAAAUUUUCAGCAGUUGGUUUUAACUUCUGCCAUC
(((..(((((((.(((((((..............)))))).).)))))))..)))......... ( -8.43 =  -8.71 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:09 2011