| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,969,265 – 14,969,381 |
| Length | 116 |
| Max. P | 0.571715 |
| Location | 14,969,265 – 14,969,381 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.32 |
| Shannon entropy | 0.29211 |
| G+C content | 0.46596 |
| Mean single sequence MFE | -25.55 |
| Consensus MFE | -17.80 |
| Energy contribution | -19.00 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14969265 116 - 27905053 -UCUCGUUAGCCUUAAAGCCAAGGUCAGCUGCCAUACUGAAUUUUAACAAGUCAAACCGCAGCCCAGACACGU---UUGCCAAGCCAAUUGGCAAAGUUUGUCGCUGCUUACAUACAUAG -....(((((((((......))))((((........))))...)))))..........(((((.(((((...(---(((((((.....)))))))))))))..)))))............ ( -29.40, z-score = -1.96, R) >droAna3.scaffold_13340 267635 109 + 23697760 UCUCCGCCAGCCUUUCAGCCAAGGUCAGAUCCCAUACUGAAUUUCAACAAGUCAUGCCACAGCCCAGACACUCCCGUUACUGAGCCACUUUGCAAAGUUUGUCCCCUAG----------- .....((.((...(((((....((((((........))))..........(((..((....))...)))....))....)))))...))..))................----------- ( -13.00, z-score = 1.04, R) >droEre2.scaffold_4770 11087386 116 + 17746568 -UCUUGUUAGCCUUUAAGCCAAGGUCAGCUCCCAUACUGAAUUUUAACAAGUCAAACCGCAGCCCAGACACGU---UUGCCAAGCCAAUUGGCAAAGUUUGUCUCUGCUCACAUACAUAG -.((((((((((((......))))((((........))))...)))))))).......((((...(((((..(---(((((((.....))))))))...)))))))))............ ( -30.40, z-score = -3.29, R) >droYak2.chr3R 3650839 116 - 28832112 -UCUCGUUAGGCUUAAAGCCAAGGUCAGCUCCCUUACUGAAUUUUAAAAAGUCAAACCGCAGCCCAGACACGU---UUGCCAAGCCAAUUGGCAAAGUUUGUCGCUCCUUACAUACAUAG -........(((.....)))((((((((........))))....................(((.(((((...(---(((((((.....)))))))))))))..))))))).......... ( -25.30, z-score = -1.37, R) >droSec1.super_25 36572 112 + 827797 -UCUCGUUAGCCUUAAAGCCAAGGUCAGCUCCCAUACUGAAUUUUAACAAGUCAAACCGCAGCCCAGACACGU---UUGCCAAGCCAAUUGGCAAAGUUUGUCGUUGCUUACAUAG---- -....(((((((((......))))((((........))))...)))))..........(((((.(((((...(---(((((((.....)))))))))))))..)))))........---- ( -27.00, z-score = -2.29, R) >droSim1.chr3R 21009071 112 + 27517382 -GCUCGUUAGCCUUAAAGCCAAGGUCAGCGCCCAUACUGAAUUUUAACAAGUCAAACCGCAGCCCAGACACGU---UUGCCAAGCCAAUUGGCAAAGUUUGUCGUUGCUUACAUAG---- -(..((((..((((......))))..))))..).........................(((((.(((((...(---(((((((.....)))))))))))))..)))))........---- ( -28.20, z-score = -1.79, R) >consensus _UCUCGUUAGCCUUAAAGCCAAGGUCAGCUCCCAUACUGAAUUUUAACAAGUCAAACCGCAGCCCAGACACGU___UUGCCAAGCCAAUUGGCAAAGUUUGUCGCUGCUUACAUAC____ .....(((.(((((......))))).))).............................(((((...((((..(...(((((((.....))))))).)..)))))))))............ (-17.80 = -19.00 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:27:00 2011