| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,953,368 – 14,953,459 |
| Length | 91 |
| Max. P | 0.860375 |
| Location | 14,953,368 – 14,953,459 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 92.05 |
| Shannon entropy | 0.14750 |
| G+C content | 0.47899 |
| Mean single sequence MFE | -26.78 |
| Consensus MFE | -26.47 |
| Energy contribution | -26.25 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14953368 91 - 27905053 ACAUGAGCUGGCUGUGUUUUGAAGGUCGCCCAAUUUCUGGGCGCUGUCAGUGAACGUGAUUUGCUUACGCUUUCUU-----UUGGAAUGCGAUCAC ...(((((...((((...((((.((.((((((.....)))))))).))))...))).)....)))))(((((((..-----..)))).)))..... ( -27.80, z-score = -1.29, R) >droAna3.scaffold_13340 251660 93 + 23697760 -CAUGAGUCGCU--UAUUUUGAAGGUCGCCUGAUUUCUGGGCGCUGUCAGUGAACGUGAUUGGCUUACGCUUUCUUUUGAAUUGGAAUGCGAUCAU -..(((((((.(--(((.((((.((.(((((.......))))))).)))).....)))).)))))))(((.((((........)))).)))..... ( -25.40, z-score = -0.77, R) >droEre2.scaffold_4770 11069259 88 + 17746568 ACAUGAGCUGGC--UGUUUUGAAGGUCG-CCAAUUUCUGGGCGCUGUCAGUGAACGUGAUUUGCUUACGCUUUCCU-----UUGGAAUGCGAUCAC ...(((((...(--((((((((.((.((-((........)))))).)))..))))).)....)))))(((.((((.-----..)))).)))..... ( -24.10, z-score = -0.34, R) >droYak2.chr3R 3636579 89 - 28832112 ACAUGAGCUGGC--UGUUUUGAAGGUCGCCCAAUUUCUGGGCGCUGUCAGUGAACGUGAUUUGCUUACGCUUUCUU-----UUGGAAUGCGAUCAC ...(((((...(--((((((((.((.((((((.....)))))))).)))..))))).)....)))))(((((((..-----..)))).)))..... ( -27.20, z-score = -1.38, R) >droSec1.super_25 22690 91 + 827797 ACAUGAGCUCGCUCUGUUUUGAAGGUCGCCCAAUUUCUGGGCGCUGUCAGUGAACGUGAUUUGCUUACGCUUUCUU-----UUGGAAUGCGAUCAC ...(((((((((......((((.((.((((((.....)))))))).)))).....))))...)))))(((((((..-----..)))).)))..... ( -27.90, z-score = -1.59, R) >droSim1.chr3R 20995093 91 + 27517382 ACAUGAGCUGGCUCUGUUUUGAAGGUCGCCCAAUUUCUGGGCGCUGUCAGUGAACGUGAUUUGCUUACGCUUUCUU-----UUGGAAUGCGAUCAC .((((.((((((((......)).((.((((((.....))))))))))))))...)))).........(((((((..-----..)))).)))..... ( -28.30, z-score = -1.61, R) >consensus ACAUGAGCUGGC__UGUUUUGAAGGUCGCCCAAUUUCUGGGCGCUGUCAGUGAACGUGAUUUGCUUACGCUUUCUU_____UUGGAAUGCGAUCAC ...(((((......((((((((.((.((((((.....)))))))).)))..)))))......)))))(((.((((........)))).)))..... (-26.47 = -26.25 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:57 2011