| Sequence ID | dm3.chr2L |
|---|---|
| Location | 763,854 – 763,921 |
| Length | 67 |
| Max. P | 0.874157 |
| Location | 763,854 – 763,921 |
|---|---|
| Length | 67 |
| Sequences | 11 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 86.78 |
| Shannon entropy | 0.27396 |
| G+C content | 0.30088 |
| Mean single sequence MFE | -9.76 |
| Consensus MFE | -7.40 |
| Energy contribution | -7.20 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.874157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 763854 67 - 23011544 ---------UUGCUCUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGAGCCACCUUCU ---------..((((..((.(((.((((((((((.....)))))))))).)))...))......))))........ ( -10.60, z-score = -2.19, R) >droSim1.chr2L 766046 67 - 22036055 ---------UUGCUCUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGUGCCACCUUCU ---------...............((((((((((.....))))))))))...(..(........)..)........ ( -8.30, z-score = -1.43, R) >droSec1.super_14 735787 67 - 2068291 ---------UUGCUCUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGAGCCACCUUCU ---------..((((..((.(((.((((((((((.....)))))))))).)))...))......))))........ ( -10.60, z-score = -2.19, R) >droYak2.chr2L 747900 67 - 22324452 ---------UUGCUUUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGAGCCACCUUCC ---------..((((..((.(((.((((((((((.....)))))))))).)))...))......))))........ ( -8.80, z-score = -1.66, R) >droEre2.scaffold_4929 818515 67 - 26641161 ---------UUGCUUUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGAGCCACCUUCU ---------..((((..((.(((.((((((((((.....)))))))))).)))...))......))))........ ( -8.80, z-score = -1.40, R) >droAna3.scaffold_12916 1733238 67 - 16180835 ---------GUGUUCUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGUCGCUUUAUGGGCCUCCUCCU ---------...............((((((((((.....))))))))))..((.(..(((.....)))..)))... ( -9.20, z-score = -1.25, R) >dp4.chr4_group3 2728116 67 + 11692001 ---------UUGCUUUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGUGCCACCUUCU ---------...............((((((((((.....))))))))))...(..(........)..)........ ( -8.30, z-score = -1.46, R) >droPer1.super_8 3818203 67 + 3966273 ---------UUGCUUUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGUGCCACCUUCU ---------...............((((((((((.....))))))))))...(..(........)..)........ ( -8.30, z-score = -1.46, R) >droWil1.scaffold_180772 6437103 76 + 8906247 UUUCUUUCUUUCGUUUUUGUUUAUGUUAUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGUGCCAAUGUUG ........................((((((((((.....))))))))))...(..(........)..)........ ( -8.30, z-score = -1.28, R) >droVir3.scaffold_12963 19278824 66 - 20206255 ----------UACUUGUUGUUUAUGUUAUUUUUAUUGAUUGAAAAUAACUUAGUGCCGCUUUAUGUGUUGUACUGU ----------..............((((((((((.....)))))))))).(((((((((.....)))..)))))). ( -13.80, z-score = -3.55, R) >droGri2.scaffold_15252 7154915 64 - 17193109 -----------ACUUGUUGUUUAUGUUAUUUUUAUUGAUUGAAAAUAACUUAGUGCCGCUUUAUGUG-UGUGUUGU -----------.............((((((((((.....)))))))))).(((..((((.....)))-.)..))). ( -12.40, z-score = -3.23, R) >consensus _________UUGCUUUUUGUUUAUGUUGUUUUUAUUGAUUGAAAAUAACUUAGUGCCGUUUUAUGUGCCACCUUCU ........................((((((((((.....))))))))))........................... ( -7.40 = -7.20 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:46 2011