| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,952,782 – 14,952,885 |
| Length | 103 |
| Max. P | 0.555048 |
| Location | 14,952,782 – 14,952,885 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 73.89 |
| Shannon entropy | 0.53866 |
| G+C content | 0.65236 |
| Mean single sequence MFE | -39.51 |
| Consensus MFE | -16.45 |
| Energy contribution | -15.80 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.555048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14952782 103 + 27905053 CUCCGCCGCCCAAGAGCGCCGAGCUCCGGCGGAAGCAGAAAACCGAACUGACCGCCACGCUCAGCGCCAGCAGCGUGGACUCCAGUGUCCUGCCA-CUGGCAAC----------- ....(((......).))((.((((...(((((...(((.........))).)))))..)))).))(((((..(((.((((......)))))))..-)))))...----------- ( -41.50, z-score = -1.93, R) >droSim1.chr3R 20994489 103 - 27517382 CCCCGCCGCCCAAGAGCGCCGAGCUCCGGCGGAAGCAGAAAACCGAACUGACCGCCACGCUCAGCGCCAGCAGCGUGGACUCCAAUGUCCUGCCA-CUGGCAUC----------- ....(((......).))((.((((...(((((...(((.........))).)))))..)))).))(((((..(((.((((......)))))))..-)))))...----------- ( -41.50, z-score = -2.68, R) >droSec1.super_25 22128 97 - 827797 CCCCGCCGCCCAAAAGCGCCGAGCUCCGGCGGAAG------ACCGAACUGACCGCCACGCUCAGCGCCAGCAGCGUGGACUCCAAUGUCCUGCCA-CUGGCAUC----------- .......((......))((.((((...(((((.((------......))..)))))..)))).))(((((..(((.((((......)))))))..-)))))...----------- ( -39.50, z-score = -2.67, R) >droYak2.chr3R 3635858 103 + 28832112 CCCCGCCGCCCAAGAGCGCCGAGCUCCGGCGGAAGCAGAAAACCGAGCUGACCGCCACGCUGAGCGCCAGCAGCGUGGACUCCAGUGUCCUGACA-CUGGCAUC----------- ..((((((.....((((.....)))))))))).(((..........))).....((((((((........))))))))...(((((((....)))-))))....----------- ( -42.40, z-score = -2.01, R) >droEre2.scaffold_4770 11068561 103 - 17746568 CCCCGCCGCCCAAGAGCGCCGAGCUCCGGCGGAAGCAGAAAACCGAGCUGACCGCCACGCUCAGCGCCAGCAGCGUGGACUCCAGUGUCCUGCCA-CUGGCAUC----------- ..((((((.....((((.....))))))))))..............(((((.((...)).)))))(((((..(((.((((......)))))))..-)))))...----------- ( -43.70, z-score = -2.23, R) >droAna3.scaffold_13340 251147 109 - 23697760 CCCCGCCGCCCAAGAGUGCCGAACUGCGCCGGAAGCAGAAAACCGAGCUGACGGCCACCUUGAGCUCCAGCAGCGUGGACUCCAGUGUCCUGCCGGCCGGCCAGGUCUC------ ((..((((.((..((((..(((..((.((((..(((..........)))..))))))..))).)))).....(((.((((......))))))).)).))))..))....------ ( -39.60, z-score = 0.05, R) >dp4.chr2 6893730 100 + 30794189 CACCGCCGCCCAAGAGCGCCGAGCUGCGACGCAAGCAGAAGACCGAGCUGACGGCCACGUUGAGUGGCAGCAGCGUGGACUCUGCCACGACUAUG-GUGGC-------------- ....((((((..((.(((.((.....)).)))..(((((.(.(((.((((...(((((.....)))))..)))).))).)))))).....))..)-)))))-------------- ( -43.20, z-score = -1.84, R) >droPer1.super_0 750144 100 + 11822988 CACCGCCGCCCAAGAGCGCCGAGCUGCGACGCAAGCAGAAGACCGAGCUGACGGCCACGUUGAGUGGCAGCAGCGUGGACUCUGCCACGACUAUG-GUGGC-------------- ....((((((..((.(((.((.....)).)))..(((((.(.(((.((((...(((((.....)))))..)))).))).)))))).....))..)-)))))-------------- ( -43.20, z-score = -1.84, R) >droWil1.scaffold_181130 1852188 115 - 16660200 CGCCGCCACCAAAAAGUGCCGAACUGAGACGCAAGCAGAAGACCGAACUCACUGCCACGCUCAGUGGCAGCAGCGUGGAGUCGACCACUCUGCCCAGCAGUGGAAGUGCUGGCGG ..((((((.((.....((((..((((((.((...((((.((......))..))))..))))))))))))((((.((((......)))).))))(((....)))...)).)))))) ( -43.60, z-score = -0.96, R) >droVir3.scaffold_13047 1768358 106 - 19223366 CACCGCCGCCCAAAAGCGCUGAGCUGCGUCGCAAGCAGAAAACGGAGCUGACAGCCACGCUUAGCGCCAGCAGUGUAGAUUCCGCUAAGAUUUCCGGCAAUCCCAA--------- ....((((.......((((((((((((.......)))......(..((.....))..))))))))))....((((.......))))........))))........--------- ( -30.20, z-score = -0.03, R) >droMoj3.scaffold_6540 14214280 106 + 34148556 CACCGCCGCCCAAAAGCGCUGAGCUGCGUCGCAAGCAGAAGACGGAACUAACUGCCACGCUCAGCUCGAGCAGCGUGGAUUCGGCAAAAAUCAGCGGCAAUCCCAA--------- ....(((((........((((((((((.......))))................(((((((..((....))))))))).))))))........)))))........--------- ( -35.29, z-score = -0.71, R) >droGri2.scaffold_15074 7127513 106 + 7742996 CACCGCCGCCCAAAAGCGCUGAGCUGCGACGCAAGCAGAACACAGAGCUAACUGCCACGCUCAGCAUUAGCAGUGUGGAUUCCACAAAGAUUUCCGGCAAUCCCAA--------- ....((((......(((.(((..((((.......))))....))).))).....(((((((..((....)))))))))................))))........--------- ( -30.40, z-score = -1.34, R) >consensus CACCGCCGCCCAAGAGCGCCGAGCUGCGGCGCAAGCAGAAAACCGAGCUGACCGCCACGCUCAGCGCCAGCAGCGUGGACUCCACUAUCCUGCCA_CUGGCAUC___________ ...((.(((......))).))......(.(....))..................(((((((..((....)))))))))..................................... (-16.45 = -15.80 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:56 2011