| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,950,483 – 14,950,578 |
| Length | 95 |
| Max. P | 0.949014 |
| Location | 14,950,483 – 14,950,578 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 84.98 |
| Shannon entropy | 0.26678 |
| G+C content | 0.48606 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -16.47 |
| Energy contribution | -17.38 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949014 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14950483 95 + 27905053 ------------AUCAAGAGCAGUAGUACAACUACUGCAAUUGCCAGUGUUACCAAAAAGGUGACCACCACCCUAACGCCCACGCUAACCAUGGCCAAAAGCACAAC ------------.......(((((((.....)))))))....((((((((((((.....))))).))).........((....))......))))............ ( -24.60, z-score = -3.06, R) >droSim1.chr3R 20992184 95 - 27517382 ------------AUCAAGAGCAGUAGUACAACUACUGCAAUUGCCAGUGUUACCAAAAAGGUGACCACCACCCUAACGCCCACGCUAACCAUGGCCAAAAGCACAAC ------------.......(((((((.....)))))))....((((((((((((.....))))).))).........((....))......))))............ ( -24.60, z-score = -3.06, R) >droSec1.super_25 19823 95 - 827797 ------------AUCAAGAGCAGUAGUACAACUACUGCAAUUGCCAGUGUUACCAAAAAGGUGACCACCACCCUAACGCCCACGCUAACCAUGACCAAAAGCACAAC ------------..(((..(((((((.....)))))))..)))...(((((........((((.....)))).....((....))..............)))))... ( -22.10, z-score = -3.13, R) >droYak2.chr3R 3633562 95 + 28832112 ------------AUUAAGAGCAGUAUUACAACUACUGCAACUACCAGUGUUACCAAAAAGGUGACCACCACCCUAACGCCCACGCUAGCCGUGGCCAAAAGCACAAC ------------.......((((((.......))))))........(((((........((((.....)))).....(.(((((.....))))).)...)))))... ( -23.80, z-score = -2.70, R) >droEre2.scaffold_4770 11066262 95 - 17746568 ------------AUCAAGAGCAGUAGUACAACUACCGCCAUUACCAGUGUUACCAAAAAGGUGACCACCACCCUAACGCCCACGCUAACCAUGGCCAAAAGCACAAC ------------.......((.((((.....)))).(((((....(((((.........((((.....)))).........)))))....))))).....))..... ( -20.67, z-score = -2.79, R) >droAna3.scaffold_13340 248836 107 - 23697760 AUUAAGAGUACAACUAGUAGUAGUAGCACCACCACAACCACUGCCAGUGUGGCCAAAAAGGUGACCACCACCCUGACACCCACUCUGUUAAUGACGAAGAGCACCAC (((((.((....(((.(((((.((.(........).)).))))).)))((((.......((((.....)))).......)))).)).)))))............... ( -19.44, z-score = 0.51, R) >consensus ____________AUCAAGAGCAGUAGUACAACUACUGCAAUUGCCAGUGUUACCAAAAAGGUGACCACCACCCUAACGCCCACGCUAACCAUGGCCAAAAGCACAAC ...................(((((((.....)))))))........(((((........((((.....))))...........((((....))))....)))))... (-16.47 = -17.38 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:55 2011