| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,947,781 – 14,947,880 |
| Length | 99 |
| Max. P | 0.815987 |
| Location | 14,947,781 – 14,947,880 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 71.15 |
| Shannon entropy | 0.53196 |
| G+C content | 0.44643 |
| Mean single sequence MFE | -25.19 |
| Consensus MFE | -14.50 |
| Energy contribution | -14.04 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14947781 99 + 27905053 -------AUGAGAAUGGGCACAACUCUCAUCGCCUUUUGCCCGUUUUUUUUUUUUUUAUGUUCGCUCAACUUGUGUGU--GGCCAUAAAUAAAUGGCCAAUCGAUUCC -------..(((((((((((.((..(.....)..)).)))))))))))..............(((.(.....).)))(--((((((......)))))))......... ( -24.20, z-score = -1.99, R) >droSim1.chr3R 20989452 98 - 27517382 -------AUGAGAAUGGGCACAACUCUCAUCGCCUUUUGCCUGUUUUUUUUUUUAU-AUGUUCGCUCAGCUUGUGUGU--GGCCAUAAAUAAAUGGCCAAUCGAUUCC -------..(((((((((((.((..(.....)..)).)))))))))))........-.....(((.(.....).)))(--((((((......)))))))......... ( -21.30, z-score = -0.62, R) >droSec1.super_25 17125 98 - 827797 -------AUGAGAAUGGGCACAACUCUCAUCGCCGUUUGCCUGUUUUUUUUUUUAU-AUGUUCGUUCAGCUUGUGUGU--GGCCAUAAAUAAAUGGCCAAUCGAUUCC -------..(((((((((((.(((..........)))))))))))))).....(((-(((..(.....)..))))))(--((((((......)))))))......... ( -22.50, z-score = -0.94, R) >droYak2.chr3R 3630824 92 + 28832112 -------AUGAGAAUGGGCACAGCUCUCAUCGCCUUUUGCCCGUUUUUUU-------AUGUUCGCUGAGUUAGUGUGU--GGCCAUAAAUAAAUGGCCAAUCGAUUCC -------..(((((((((((..((.......))....)))))))))))..-------.........((((..((...(--((((((......)))))))))..)))). ( -27.30, z-score = -2.22, R) >droEre2.scaffold_4770 11063550 92 - 17746568 -------AUGAGAAUGGGCACAACUCUCAUCGCCUUUUGCCCGUUUUUUU-------AUGUUCGCUGACUUUGUGUGU--GGCCAUAAAUAAAUGGCCAAUCGAUUCC -------..(((((((((((.((..(.....)..)).)))))))))))..-------.....(((.......)))..(--((((((......)))))))......... ( -23.80, z-score = -1.66, R) >droVir3.scaffold_13047 1763075 101 - 19223366 AUACGGCCAAAUGUUGGCCUCCACU-UGGUUAGCGGCUGGUUGAGAAUUGGCGCAC-AACUGCAGCC---UCGUCUGG--GGCCAUAAACAAAUCGACUAUCGAUGCC ...((((((..((((((((......-.))))))))..))))))......((((((.-...))).(((---((....))--))).........((((.....))))))) ( -33.10, z-score = -0.99, R) >droGri2.scaffold_15074 7122432 96 + 7742996 ----------ACGCUGGCCUCCACU-UGAUUAGCAGCAGGCUGAGAAUUGGCGCAC-AAAUGCAGUCACGUUGUCUGUUUGGCCAUAAAUAAAUCGACAAUCGAUGCC ----------..(((((((......-.(((..(((((.(((((....(((.....)-))...)))))..)))))..))).))))).......((((.....)))))). ( -24.10, z-score = 0.33, R) >consensus _______AUGAGAAUGGGCACAACUCUCAUCGCCUUUUGCCUGUUUUUUUUUUUAU_AUGUUCGCUCAGCUUGUGUGU__GGCCAUAAAUAAAUGGCCAAUCGAUUCC .........(((((((((((.................)))))))))))..............(((.........)))...((((((......)))))).......... (-14.50 = -14.04 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:54 2011