| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,934,120 – 14,934,211 |
| Length | 91 |
| Max. P | 0.694125 |
| Location | 14,934,120 – 14,934,211 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 96.26 |
| Shannon entropy | 0.06374 |
| G+C content | 0.40879 |
| Mean single sequence MFE | -21.56 |
| Consensus MFE | -19.04 |
| Energy contribution | -18.88 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.694125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14934120 91 - 27905053 UUUCUUCUUUUGCAUAUCUUUAUGACCAUCCCUAGUUGUUAUUAUCGUUUUGGGGAGUGCGCUCAUAAAUCACAUGAUCAUGCAGCACGUG .........((((((((((((((((((((((((((.((.......))..))))))).)).).)))))))......))).))))))...... ( -18.60, z-score = -0.89, R) >droEre2.scaffold_4770 11050209 91 + 17746568 UUUCUUCUUUUGCAUAUCUUUAUGACAAUCCCCAGUUGUUAUUACCGUUUUGGGGAGUGCGGUCAUAAAUCACAUGAUCAUGCAGCACGUG .........(((((((((((((((((..(((((((..((....))....))))))).....))))))))......))).))))))...... ( -23.70, z-score = -2.30, R) >droYak2.chr3R 3617751 91 - 28832112 UUUCUUCUUUUGCAUAUCUUUAUGACAAUCCCCAGUAGUUAUUACCGUUUUGGGGAGUGCGGUCAUAAAUCACACGAUCAUGCAGCACGUG .........(((((((((((((((((..(((((((..((....))....))))))).....))))))))......))).))))))...... ( -23.70, z-score = -2.57, R) >droSec1.super_77 115026 91 + 117255 UUUCUUCUUUUGCAUAUCUUUAUGACCAUCCCCAGUUGUUAUUAUCGUUUUGGGGAGUGCGCUCAUAAAUCACAUGAUCAUGCAGCACGUG .........((((((((((((((((((((((((((.((.......))..))))))).)).).)))))))......))).))))))...... ( -20.90, z-score = -1.65, R) >droSim1.chr3R 20975749 91 + 27517382 UUUCUUCUUUUGCAUAUCUUUAUGACCAUCCCCAGUUGUCAUUAUCGUUUUGGGGAGUGCGCUCAUAAAUCACAUGAUCAUGCAGCACGUG .........((((((((((((((((((((((((((.((.......))..))))))).)).).)))))))......))).))))))...... ( -20.90, z-score = -1.49, R) >consensus UUUCUUCUUUUGCAUAUCUUUAUGACCAUCCCCAGUUGUUAUUAUCGUUUUGGGGAGUGCGCUCAUAAAUCACAUGAUCAUGCAGCACGUG .........(((((((((((((((((..(((((((..............)))))))....).)))))))......))).))))))...... (-19.04 = -18.88 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:54 2011