| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,917,855 – 14,918,023 |
| Length | 168 |
| Max. P | 0.984847 |
| Location | 14,917,855 – 14,918,023 |
|---|---|
| Length | 168 |
| Sequences | 5 |
| Columns | 173 |
| Reading direction | reverse |
| Mean pairwise identity | 93.83 |
| Shannon entropy | 0.10563 |
| G+C content | 0.47209 |
| Mean single sequence MFE | -55.10 |
| Consensus MFE | -48.96 |
| Energy contribution | -49.04 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.18 |
| SVM RNA-class probability | 0.984847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14917855 168 - 27905053 UAUAGUUUUGCUGCAGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCGACUGGCUGCCAAUUAGUCGAAAUGUCUAAAUGGCGCAGUGAUCGUUGGACAUUCAGAA----AUAGUUUAGAAAACGACGGUUCUGUACCAAAGGAAAGUGAAAUUU-UUGUCUGCC ...(((((..(((((..(((((.((((((((....)))))...........((((....))))))).....)))))..))).....(((..(((.((((((((....(((.(((----....))).)))..)))))))))))..)))......))..))))).-......... ( -52.60, z-score = -1.98, R) >droEre2.scaffold_4770 11033989 166 + 17746568 UAUAG-UUUGCUGCAGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGACAGCCAAAUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGAAAUUCAGAA----AUAGUUUAGAAAACGACGGUUCUGUACCGAAGGAAAGUGAAAUU--UUGGUUGCC ....(-(((((((....(((..(((.(((((....)))))..)))..)))))).)))))(((.(((((....(((.....(((...(((..(((.((((((((....(((.(((----....))).)))..)))))))))))..))).)))....)))....--))))).))) ( -57.40, z-score = -3.35, R) >droYak2.chr3R 3601694 170 - 28832112 UAUAG-UUUGCUGCAGAUCGAUGGUCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAAAUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUAGACAUUCAGAAAUACAUAGUUUAGAAAUCGACGGUUCUGUACCGAAGGAAAGUGAAAUU--UUGGUUGCC ....(-((((..((...(((..((..(((((....)))))..))...)))..)))))))(((.(((((....(((.....(((...(((..(((.(((((((.((..(((.(((........))).))).))))))))))))..))).)))....)))....--))))).))) ( -50.70, z-score = -2.27, R) >droSec1.super_77 96004 168 + 117255 UAUAGUUUUGCUUCGGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAACUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGACAUUCAGAA----AUAGUUUAGAAAACGACGGUUCUGUACCGAAGGAAAGUGAAAUUUUUUGUCUGC- .....((((.((((((.(((..(((.(((((....)))))..)))..))).((((....))))((((.((((.(.....).)))).))))((((.((((((((....(((.(((----....))).)))..)))))))))))).)))))).)))).................- ( -57.40, z-score = -3.13, R) >droSim1.chr3R 20957978 169 + 27517382 UAUAGUUUUGCUUCGGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAACUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGACAUUCAGAA----AUAGUUUAGAAAACGACGGUUCUGUACCGAAGGAAAGUGAAAUUUGUUGUCUGCC .....((((.((((((.(((..(((.(((((....)))))..)))..))).((((....))))((((.((((.(.....).)))).))))((((.((((((((....(((.(((----....))).)))..)))))))))))).)))))).)))).................. ( -57.40, z-score = -3.03, R) >consensus UAUAGUUUUGCUGCAGAUCGAUGGGCGGCACGUGAGUGCCCUCCCCCCGAAAGCCAACUGGCUGCCAAUUAGUCGAAAUGCCUAAAUGGCGCAGUAAUCGUUGGACAUUCAGAA____AUAGUUUAGAAAACGACGGUUCUGUACCGAAGGAAAGUGAAAUUU_UUGUCUGCC ...(((((..((.((..(((((.((((((((....)))))...........((((....))))))).....)))))..))(((...(((..(((.((((((((....(((.(((........))).)))..)))))))))))..))).)))..))..)))))........... (-48.96 = -49.04 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:51 2011