| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,912,824 – 14,912,939 |
| Length | 115 |
| Max. P | 0.662148 |
| Location | 14,912,824 – 14,912,939 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 87.44 |
| Shannon entropy | 0.22145 |
| G+C content | 0.44696 |
| Mean single sequence MFE | -33.42 |
| Consensus MFE | -22.52 |
| Energy contribution | -22.64 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14912824 115 - 27905053 UUUUCACUCCCUGCCAUUAGUCAUAGGAUCCAUGCAGAUACUUUGCCGCCUCA--AUGA--CAAGCAUUUGAAAUUCAUCGAGUGGCAGGCAGGCGGUGAGCUUGUCAAAAGGCAGCUG ...(((((.((((((....((((((((......(((((...)))))..)))..--))))--)...(((((((......)))))))...)))))).)))))(((.(((....)))))).. ( -39.70, z-score = -2.33, R) >droSim1.chr3R 20953007 115 + 27517382 UUUUCACUCCCUGCCAUUACUCAUAGGAUCCAUUCAGAUACUUUGUCACGUCA--AUGA--CGAGCAUUUGAAAUUCAUCGAGUGGCAAACAGGCGGUGAGCUUGUCAAAAGACAGCUG ...(((((.((((...((((((...((((...(((((((.(((.((((.....--.)))--)))).)))))))))))...))))))....)))).)))))(((.(((....)))))).. ( -33.60, z-score = -2.42, R) >droSec1.super_77 91024 115 + 117255 UUUUCACUCCCUGCCAUUACUCAUAGGAUCCAUCCAGAUACUUUGCUGCGUCA--AUGA--CGAGCAUUUGAAAUUCAUCGAGUGGCAAACAGGCGGUGAGCUUGUCAAAAGACAGCUG ...(((((.((((...((((((...(((....)))........((((.((((.--..))--)))))).............))))))....)))).)))))(((.(((....)))))).. ( -33.70, z-score = -2.01, R) >droYak2.chr3R 3596730 110 - 28832112 UUUUCACUCCCUGCAAUUUCUAAUAGGAUCCAUCCAGAUAAAUUACCUCGUC---AUGU--UAAGCAUUUGAAAUUUAUCGAGUGG----CAGGCGGUGAGCUUUUCAAAAGACAGCUG ...(((((.(((((...(((.....(((....))).((((((((...(((..---(((.--....))).))))))))))))))..)----)))).)))))(((..((....)).))).. ( -28.30, z-score = -2.22, R) >droEre2.scaffold_4770 11029082 115 + 17746568 UUUUCACUCCCUGCAAUUACUCAUAGGAUCCAUCCAGAUACUUUGCCUCUUCAUGUCGAUUCAUGCAUUUGAAAUUCAUCGAGUGG----CAGGCGGUGAGCUUGUCAAAAGACAGCUG ...(((((.(((((.......(((.((((((((..(((.........)))..)))..))))))))(((((((......))))))))----)))).)))))(((.(((....)))))).. ( -31.80, z-score = -1.77, R) >consensus UUUUCACUCCCUGCCAUUACUCAUAGGAUCCAUCCAGAUACUUUGCCGCGUCA__AUGA__CAAGCAUUUGAAAUUCAUCGAGUGGCA__CAGGCGGUGAGCUUGUCAAAAGACAGCUG ...(((((.((((............(((....)))..............................(((((((......))))))).....)))).)))))(((.(((....)))))).. (-22.52 = -22.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:50 2011