| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,904,319 – 14,904,415 |
| Length | 96 |
| Max. P | 0.801764 |
| Location | 14,904,319 – 14,904,415 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.76 |
| Shannon entropy | 0.37612 |
| G+C content | 0.45703 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -18.49 |
| Energy contribution | -19.21 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14904319 96 + 27905053 UUCCUCGUGGCGUUGCAUUGGGGGGUCUGGGUCUGUAGGGCGCC-GGGAAAGUUAAUUAAUUUUUC--AGCGAAAGUU---GCCUUAAUUAAUGCACAUCAG- ...((.(((((((((.(((((((..((((((((.....))).))-))).................(--(((....)))---)))))))))))))).))).))- ( -28.90, z-score = -1.32, R) >droSim1.chr3R 20944678 96 - 27517382 UUCCUCGUUGCAGUGUAUUGGGGGGUCUGGGUCUGUAGGGCGCC-GGGAAAGUUAAUUAAUUUUCC--AGCGAAAGUU---GCCUUAAUUAAUGCACAUCAG- ..(((((.(((...))).)))))(((.((.((...((((((...-.((((((((....))))))))--(((....)))---))))))....)).)).)))..- ( -28.20, z-score = -1.26, R) >droSec1.super_77 82723 96 - 117255 UUCCUCGUUGCAGUGUAUUGGGGGGUCUGGGUCUGUAGGGCGCC-GGGAAAGUUAAUUAAUUUUCC--AGCGAAAGUU---GCCUUAAUUAAUGCACAUCAG- ..(((((.(((...))).)))))(((.((.((...((((((...-.((((((((....))))))))--(((....)))---))))))....)).)).)))..- ( -28.20, z-score = -1.26, R) >droYak2.chr3R 3588565 91 + 28832112 UUCUUCGUCGCAGUGCAUUGG---GUCUGGGUCUGUAGGGCGCC-GGGAAAGUUAAUUAAUUUUCC--AGCGAAAGUU---GCCUUAAUUAAUGCACAUC--- ............(((((((((---...........((((((...-.((((((((....))))))))--(((....)))---)))))).)))))))))...--- ( -28.30, z-score = -2.32, R) >droEre2.scaffold_4770 11020874 93 - 17746568 UUCCUCGAUGCAGUGCAUUGG---GUCUGGGUCUGUAGGGCGCC-GGGAAAGUUAAUUAAUUUUCC--AGCGAAAGUU---GCCUUAAUUAAUGCACAUCAG- ............(((((((((---...........((((((...-.((((((((....))))))))--(((....)))---)))))).))))))))).....- ( -28.30, z-score = -1.69, R) >droAna3.scaffold_13340 17538637 88 + 23697760 AGACUCUGCUCGGUGCAAUGG---------GUCUGUAGGGCGAU-GGGAAAGUUAAUUAAUUUGCC--AGCGAAAGUU---GCUUUAAUUAAUGCACCAUUUC (((((((((.....)))..))---------)))).......(((-((....(((((((((...((.--(((....)))---)).)))))))))...))))).. ( -26.70, z-score = -2.10, R) >dp4.chr2 6840171 87 + 30794189 ------CUGUCAGUGCAUUGG---------GUUUGUAGGGCGCCUGGGAAAGCUAAUGAAUUUUCGCGAGGGAAAGUUUUUGCCUUAAUUAAUGCACAUCAU- ------......(((((((((---------.....((((((((........))....((((((((......))))))))..)))))).))))))))).....- ( -24.50, z-score = -1.20, R) >droPer1.super_0 675515 85 + 11822988 ------CUGUCAGUGCAUUGG---------GUUUGUAGGGCGCCUGGGAAAGCUAAUGAAUUUUCGCGAGGGAAAGUU--UGCCUUAAUUAAUGCACAUCAU- ------......(((((((((---------.....((((((((........))....((((((((......)))))))--))))))).))))))))).....- ( -25.10, z-score = -1.46, R) >consensus UUCCUCGUGGCAGUGCAUUGG___GUCUGGGUCUGUAGGGCGCC_GGGAAAGUUAAUUAAUUUUCC__AGCGAAAGUU___GCCUUAAUUAAUGCACAUCAG_ ............(((((((((..............((((((.....((((((((....))))))))..(((....)))...)))))).)))))))))...... (-18.49 = -19.21 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:48 2011