| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,947,154 – 7,947,247 |
| Length | 93 |
| Max. P | 0.997719 |
| Location | 7,947,154 – 7,947,247 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.37 |
| Shannon entropy | 0.39705 |
| G+C content | 0.45930 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -15.80 |
| Energy contribution | -19.32 |
| Covariance contribution | 3.52 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.18 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.997719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7947154 93 - 23011544 ----------------UGCUUCUCUGGGUUUUCCCUUUUCAUUUUCCGGCCAGCACCUCUGUGCCAUUUGCAUGAUAACGUGUUUAUAAUUUUGACCCAGUUUGCAGAG ----------------(((....(((((((.................((((((.....))).)))((..(((((....)))))..))......)))))))...)))... ( -24.70, z-score = -2.88, R) >droSim1.chr2L 7742798 99 - 22036055 ----------UCUCUCUGUUGCUCUGGGUUUUCCCUUUUCAUUUUCCGGCCAGCACCUCUGUGCCAUUUGCAUGAUAACGUGUUUAUAAUUUUGACCCAGUUUGCAGAG ----------...((((((....(((((((.................((((((.....))).)))((..(((((....)))))..))......)))))))...)))))) ( -29.50, z-score = -4.24, R) >droSec1.super_3 3460989 97 - 7220098 ------------UCUCUGCAUCUCUGGGUUUUCCCUUUUCAUUUUCCGGCCAGCACCUCUGUGCCAUUUGCAUGAUAACGUGUUUAUAAUUUUGACCCAGUUUGCAGAG ------------.(((((((...(((((((.................((((((.....))).)))((..(((((....)))))..))......)))))))..))))))) ( -32.90, z-score = -5.73, R) >droEre2.scaffold_4929 16869659 109 - 26641161 UGCCUCUCUGUCUCUCUGUCGCUCUGGGUUUUCCCUUUUCAUUUUCCGGCCACCACCUCUGUGCCAUUUGCAUGAUAACGUGUUUAUAAUUUUGACCCAGUUUGCAGAG .............(((((.((..(((((((.................(((((.......)).)))((..(((((....)))))..))......)))))))..))))))) ( -26.50, z-score = -2.99, R) >droMoj3.scaffold_6500 29744779 80 + 32352404 -----------------------------CGUCUCUCGCUAGCUCGCUCUGCGUGUCCCUGUGCCAUUUGCAUGAUAACGUGUUUAUAAUUUUGACCCAGUUUGUGGGC -----------------------------............((((((.(((.(.(((...((...((..(((((....)))))..)).))...)))))))...)))))) ( -16.90, z-score = -0.05, R) >consensus ____________UCUCUGCUGCUCUGGGUUUUCCCUUUUCAUUUUCCGGCCAGCACCUCUGUGCCAUUUGCAUGAUAACGUGUUUAUAAUUUUGACCCAGUUUGCAGAG .............((((((....(((((((.................((((((.....))).)))((..(((((....)))))..))......)))))))...)))))) (-15.80 = -19.32 + 3.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:47 2011