| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,890,550 – 14,890,645 |
| Length | 95 |
| Max. P | 0.778974 |
| Location | 14,890,550 – 14,890,645 |
|---|---|
| Length | 95 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 76.81 |
| Shannon entropy | 0.41913 |
| G+C content | 0.52991 |
| Mean single sequence MFE | -32.77 |
| Consensus MFE | -23.43 |
| Energy contribution | -21.97 |
| Covariance contribution | -1.46 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778974 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14890550 95 - 27905053 -AGCCGACAUUUCUCUGUCGUCUCGGAGUGCGUAUUUCUGGGCAUUGGGCUUUGGGUUCGCGCAACGGUGUG------AAAAACGCGACGGAGUGUGCCAGA -....(.(((..(((((((((((((((((.((.............)).))))))))(((((((....)))))------))....))))))))).))).)... ( -32.12, z-score = -0.21, R) >droPer1.super_0 660161 95 - 11822988 UAACCGACAUUUGUCGUGCGUAUU----UCUGUAUUUUUCUGUCUUU--CUCUGUAUUCACAGAGCCGCGUG-AAAAAAAAAACGCGCGAGAGCGUGCCAGA ....((((....))))........----((((..(((((((((....--((((((....))))))..))).)-))))).....(((((....))))).)))) ( -26.60, z-score = -1.70, R) >dp4.chr2 6824558 95 - 30794189 -AACCGACAUUUGUCGUGCGUAUU----UCUGUAUUUUUCUGUCUUU--CUCUGUAUUCACAGAGCCGCGUGAAAAAAAAAAACGCGCGAGAGCGUGCCAGA -...((((....))))........----((((..(((((((((....--((((((....))))))..))).))))))......(((((....))))).)))) ( -26.60, z-score = -1.65, R) >droEre2.scaffold_4770 11007590 92 + 17746568 -AGCCGACAUUUCUCCGUCG--UCGGAGUGCGUAUUCCUAGGCUUUGGGCUU-GGGUUCGCGCAGCGGUGUG------AAAAACGCGACGGAGUGUGCCAGA -....(.(((..(((((((.--.((..(((((....(((((((.....))))-)))..)))))..))((((.------....))))))))))).))).)... ( -38.50, z-score = -1.80, R) >droYak2.chr3R 3571238 92 - 28832112 -AGCCGACAUUUCUUCGUCG--UCGGAUUGCGUAUUUCUAGGCUUUGGGCUU-GGGUUUGCGCAGCGGUGUG------AAAAACGCGACGGAGUGUGCCAGA -....(.(((..(((((((.--.((..(((((((..(((((((.....))))-)))..)))))))))((((.------....))))))))))).))).)... ( -34.80, z-score = -1.57, R) >droSec1.super_77 69026 95 + 117255 -AGCCGACAUUUCUCUGUCGUCUCGGAGUGCGUAUUUCUGGGCAUUGGGCUUGGAGUUCGCGCAGCGGUGUG------AAAAACGCGACGGAGUGUGCCAGA -....(.(((..(((((((....((..(((((...(((..(((.....)))..)))..)))))..))((((.------....))))))))))).))).)... ( -35.40, z-score = -0.87, R) >droSim1.chr3R 20930974 95 + 27517382 -AGCCGACAUUUCUCUGUCGUCUCGGAGUGCGUAUUUCUGGGCAUUGGGCUUGGAGUUCGCGCAGCGGUGUG------AAAAACGCGACGGAGUGUGCCAGA -....(.(((..(((((((....((..(((((...(((..(((.....)))..)))..)))))..))((((.------....))))))))))).))).)... ( -35.40, z-score = -0.87, R) >consensus _AGCCGACAUUUCUCUGUCGUCUCGGAGUGCGUAUUUCUGGGCAUUGGGCUUUGGGUUCGCGCAGCGGUGUG______AAAAACGCGACGGAGUGUGCCAGA .....(.(((..(((((((.........(((((..(((..(((.....)))..)))...)))))...((((...........))))))))))).))).)... (-23.43 = -21.97 + -1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:45 2011