| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,882,175 – 14,882,277 |
| Length | 102 |
| Max. P | 0.892825 |
| Location | 14,882,175 – 14,882,277 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 88.46 |
| Shannon entropy | 0.19410 |
| G+C content | 0.53188 |
| Mean single sequence MFE | -32.98 |
| Consensus MFE | -24.28 |
| Energy contribution | -24.44 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892825 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14882175 102 + 27905053 UACUACCUAUAUGCAGGCAUUCCGCCACCACAGACGACCUUCAAGUGACGCCGCGACUUUACUCAUCGCAAGAUGAGUGGUGGUGGUAGCUCGAUC-GUCUGA ...............(((.....)))....(((((((...((.(((...(((((.(((..(((((((....)))))))))).))))).))).))))-))))). ( -41.50, z-score = -4.24, R) >droSim1.chr3R 20922762 100 - 27517382 UACUACCUAUAUGCAGGCAUCCCGCCACCACAGACGACCUUCAAGUGACGCCGCGUUUCGACUCAUCGCAAGAUGAGUGGUGGU---AGCUCAAUCCGACCGA (((((((...((((.(((.....)))..(((.((......))..))).....))))....(((((((....)))))))))))))---)............... ( -29.90, z-score = -1.74, R) >droSec1.super_77 60852 100 - 117255 UACUACCUAUAUGCAGGCAUUCCGCCACCACAGACGACCUUCAAGUGACGCCGCGUCUCGACUCAUCGCAAGAUGAGUGGUGGU---AGCUCAAUCUGACUGA ..(((((........(((.....)))((((((((((..(.((....)).)...)))))....(((((....)))))))))))))---)).............. ( -31.80, z-score = -1.89, R) >droYak2.chr3R 3562974 100 + 28832112 UACUACCUAUAUGCAGGCAUUCCACCACCACAGACGACCUUCAAGUGACGGCGCGACUCGACUCAUCGCAAGAUGAGUGGUAGC--UCGAUCGACU-GAAUGA .....(((......)))(((((............((.((.((....)).))))((((((.(((((((....))))))).).)).--))).......-))))). ( -27.00, z-score = -1.16, R) >droEre2.scaffold_4770 10999455 100 - 17746568 UACUACCUAUAUGCAUGCAUUCCGCCACCACAGACGACCUUCAAGUGGCGGCGCGACUCGACUCAUCGCAAGAUGAGUGGUAGC--UCGAUCGACU-GAAUGA .................(((((((((.((((.((......))..)))).))))((((((.(((((((....))))))).).)).--))).......-))))). ( -34.70, z-score = -2.92, R) >consensus UACUACCUAUAUGCAGGCAUUCCGCCACCACAGACGACCUUCAAGUGACGCCGCGACUCGACUCAUCGCAAGAUGAGUGGUGGU__UAGCUCGAUC_GACUGA ..(((((....(((.(((.....)))..(((.((......))..))).....))).....(((((((....)))))))))))).................... (-24.28 = -24.44 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:43 2011