| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,881,990 – 14,882,095 |
| Length | 105 |
| Max. P | 0.765113 |
| Location | 14,881,990 – 14,882,095 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 96.64 |
| Shannon entropy | 0.05755 |
| G+C content | 0.51790 |
| Mean single sequence MFE | -33.84 |
| Consensus MFE | -31.60 |
| Energy contribution | -31.80 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14881990 105 - 27905053 --UCGAGGGGCCACUGCACAUUGUUGUCUCUCGGCCAUUAUUUGUCUUGGCUGGAUUUGUGUGUCGCCGAGCGUUGGCGGCUCAUUUCUGUCCCCUUUUAUGAAACG-- --.((((((((.((........)).))))))))((((..........)))).((((..(((.((((((((...)))))))).)))....))))..............-- ( -36.30, z-score = -2.22, R) >droSim1.chr3R 20922583 107 + 27517382 --UCGAGGGGCCACUGCACAUUGUUGUCUCUCGGCCAUUAUUUGUCUUGGCUUGAUUUGUGUGUCGCCGAGCGUUGGCGGCUCAUUUCUGUCCCCUUUUAUGAAACGCG --.((((((((.((........)).))))))))((((..........))))..(((..(((.((((((((...)))))))).)))....)))................. ( -33.00, z-score = -1.10, R) >droSec1.super_77 60671 109 + 117255 UCGAGAGGGGCCACUGCACAUUGUUGUCUCUCGGCCAUUAUUUGUCUUGGCUUGAUUUGUGUGUCGCCGAGCGUUGGCGGCUCAUUUCUUUCCCCUUUUAUGAAACGCG ..(((((((((((..(((.((.((.(((....))).)).)).)))..))))..((...(((.((((((((...)))))))).))).))....))))))).......... ( -33.90, z-score = -1.30, R) >droYak2.chr3R 3562795 105 - 28832112 --UCGAGGGGCCACUGCACAUUGUUGUCUCUCGGCCAUUAUUUGUCUUGGCUUGAUUUGUGUGUCGCCGAGCGUUGGCGGCUCAUUUCUGUCCCCUUUUAUGAAACG-- --.((((((((.((........)).))))))))((((..........))))..(((..(((.((((((((...)))))))).)))....)))...............-- ( -33.00, z-score = -1.63, R) >droEre2.scaffold_4770 10999270 105 + 17746568 --UCGAGGGGCCACUGCACAUUGUUGUCUCUCGGCCAUUAUUUGUCUUGGCUUGAUUUGUGUGUCGCCGAGCGUUGGCGGCUCAUUUCUGUCCCCUUUUAUGAAACG-- --.((((((((.((........)).))))))))((((..........))))..(((..(((.((((((((...)))))))).)))....)))...............-- ( -33.00, z-score = -1.63, R) >consensus __UCGAGGGGCCACUGCACAUUGUUGUCUCUCGGCCAUUAUUUGUCUUGGCUUGAUUUGUGUGUCGCCGAGCGUUGGCGGCUCAUUUCUGUCCCCUUUUAUGAAACG__ ....((((((.((..(((((.....(((....(((((..........))))).))).)))))((((((((...)))))))).......)).))))))............ (-31.60 = -31.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:42 2011