Locus 10585

Sequence ID dm3.chr3R
Location 14,879,649 – 14,879,741
Length 92
Max. P 0.598743
window14553

overview

Window 3

Location 14,879,649 – 14,879,741
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.02
Shannon entropy 0.43397
G+C content 0.59817
Mean single sequence MFE -36.43
Consensus MFE -21.04
Energy contribution -20.95
Covariance contribution -0.09
Combinations/Pair 1.42
Mean z-score -1.38
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.22
SVM RNA-class probability 0.598743
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 14879649 92 - 27905053
AACGCCCAUUGCCACGCCCCCGGCUGCGGCUGCUGCUCCAGUGCCACCGU------CUCAUUUGGAAGUUGGGCAUUGGGCCUGGUCUUGGGUUAUUU
...(((((..((((.((((((((((..(((.((((...))))))).(((.------......))).)))))).....)))).))))..)))))..... ( -37.00, z-score =  -0.77, R)
>droAna3.scaffold_13340 17516182 80 - 23697760
AACGCCCACUGACACGCCCCU-----CGUUUGGAAGCCCAAGCUUAAAGCC-----------UGGGA-UUGGG-AUUGGGCUUGGGCUUGGGCCAUUU
...((((.(..(.(((.....-----))))..)((((((((((((((..((-----------(....-..)))-.))))))))))))))))))..... ( -34.80, z-score =  -2.05, R)
>droEre2.scaffold_4770 10996965 98 + 17746568
AACGCCCAUUGCCACGCCCCCGGCUGCGGCUGCUGCUGCUGCUCCACUGCCACCGUCUCAUUUGGAACUUGGGCAUUGGGCCUGGUACUGGCUUAUUU
...(((...(((((.((((..(((.(((((....))))).)))....((((...((..(....)..))...))))..)))).)))))..)))...... ( -38.50, z-score =  -1.69, R)
>droYak2.chr3R 3558369 98 - 28832112
AACGCCCAUUACCACGCCCCCGGCUGCGGCAGCGGCUGCUGCUCCACUGCCACCGUCUCAUUUGGAACUUGGGCAUUGGGCCUGGUCUUGGGAUAUUU
....((((..((((.((((..((..(((((((...))))))).))..((((...((..(....)..))...))))..)))).))))..))))...... ( -41.50, z-score =  -2.08, R)
>droSec1.super_77 58346 94 + 117255
AACGCCCAUUGCCACGCCCCCAGCGGCGGCUGCUGCUCCAGUGCCACCGUC----UCUCAUUUGAAAGUUGAGCAUUGAGCCUGGUCUUGAGUUAUUU
...((.((..((((.((....((((((....)))))).(((((((((..((----........))..).)).)))))).)).))))..)).))..... ( -26.30, z-score =  -0.22, R)
>droSim1.chr3R 20920380 94 + 27517382
AACGCCCAUUGCCACGCCCCCGGCGGCGGCUGCUGCUCCAGUGCCACCGUC----UCUCAUUUGGAAGUUGGGCAUUGGGCCUGGUCUUGGGUUAUUU
...(((((..((((.((((..(((((.(((.((((...))))))).)))))----.((((.........))))....)))).))))..)))))..... ( -40.50, z-score =  -1.46, R)
>consensus
AACGCCCAUUGCCACGCCCCCGGCUGCGGCUGCUGCUCCAGUGCCACCGCC____UCUCAUUUGGAAGUUGGGCAUUGGGCCUGGUCUUGGGUUAUUU
...(((((..((((.((((...((....((((......)))).(((...((............))....)))))...)))).))))..)))))..... (-21.04 = -20.95 +  -0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:42 2011