| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,878,176 – 14,878,271 |
| Length | 95 |
| Max. P | 0.534520 |
| Location | 14,878,176 – 14,878,271 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 70.60 |
| Shannon entropy | 0.46521 |
| G+C content | 0.62132 |
| Mean single sequence MFE | -20.95 |
| Consensus MFE | -14.02 |
| Energy contribution | -14.90 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.534520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14878176 95 + 27905053 ----GGCCCGAGGGUUUUUGUCUGCCGCACAUCCUCU--CCAGCAGGAGAGACACACCUAUGCCUCACACCCCCCCCCCCCCACCAAUCACUCUUCUCGCG ----(((...(((.....(((.....)))....((((--((....)))))).....)))..)))..................................... ( -17.50, z-score = -0.08, R) >droSim1.chr3R 20918944 80 - 27517382 ----GGCCCGAGGGUUUUUGUCUGCCGCACAUCCUCUUUCCAGCAGGAGAGACACACCUCUGCCCCCC-UCACCCUCUUCCCACG---------------- ----((...((((((........((.........(((((((....))))))).........)).....-..))))))...))...---------------- ( -19.73, z-score = -1.10, R) >droSec1.super_77 56882 80 - 117255 ----GGCCCGCGGGUUUUUGUCUGCUGCACAUCCUCUUUACAGCAGGAGAGACACACCUCUGCCCCCCAAC-CACUCUUCCCGCG---------------- ----....((((((......(((((((.............)))))))((((......))))..........-.......))))))---------------- ( -22.62, z-score = -1.94, R) >droYak2.chr3R 3556962 75 + 28832112 ----GGCCCGAGGGUUUUUGUCUGCCGCACAUCCUCU--UCGCCAGGAGAGACACACCUCUGUCCGUGGAUGGUUCUCCAG-------------------- ----(((..((((((...(((.....))).)))))).--..))).((((((...((((.(.....).)).)).))))))..-------------------- ( -23.20, z-score = -0.03, R) >droEre2.scaffold_4770 10995570 80 - 17746568 CCGCGGCCCGAGGGUUUUUGUCUGCCGCACAUCCUCU--GCGCCAGGAGAGACACACCUCUGCCCCAU-CCACUUUUCACCCG------------------ ..(.(((..((((((((((..(((.((((.......)--))).)))..)))).)).)))).))).)..-..............------------------ ( -21.70, z-score = -1.02, R) >consensus ____GGCCCGAGGGUUUUUGUCUGCCGCACAUCCUCU__CCAGCAGGAGAGACACACCUCUGCCCCAC_ACACCCUCCCCCCAC_________________ ....(((..((((((((((..((((((.............))))))..)))).)).)))).)))..................................... (-14.02 = -14.90 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:41 2011