| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,870,155 – 14,870,253 |
| Length | 98 |
| Max. P | 0.989146 |
| Location | 14,870,155 – 14,870,253 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 70.28 |
| Shannon entropy | 0.61677 |
| G+C content | 0.42040 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.54 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14870155 98 + 27905053 --ACCCCACGAUCCCAGCGACUUUUGCGAGUCUGAUUUGAAAUGCGA------AUCACUUGAACUUUCUCAUUUGACUCCCGAAUCGUCGGAAAUGAGAUAA-AAGC --........(((.((.((((.((((.((((((((((((.....)))------))))..(((......)))...))))).))))..))))....)).)))..-.... ( -21.20, z-score = -1.13, R) >droSim1.chr3R 20910688 98 - 27517382 --GCCCCACGAUCCCAGCGACUUUUGCGAGUCUGAUUUGAAAUGCGA------AUCACUUGAACUUUCUCAUUUGACUCCCGAAUCGUCGGAAAUGAGAUAA-AAGC --........(((.((.((((.((((.((((((((((((.....)))------))))..(((......)))...))))).))))..))))....)).)))..-.... ( -21.20, z-score = -0.88, R) >droSec1.super_77 48842 98 - 117255 --GCCCCACGAUCCCAGCGACUUUUGCGAGUCUGAUUUGAAAUGCGA------AUCACUUGAACUUUCUCAUUUGACUCCCGAAUCGUCGGAAAUGAGAUAA-AAGC --........(((.((.((((.((((.((((((((((((.....)))------))))..(((......)))...))))).))))..))))....)).)))..-.... ( -21.20, z-score = -0.88, R) >droYak2.chr3R 3548272 98 + 28832112 --ACCCCACGAUCCCAGCGACUUUUGCGAGUCUGAUUUGAAAUGCGA------AUCAUUUAAACUUUCUCAUUUGACUCCCGAAUCGUCGGAAAUGAGAUAA-AAGC --..............(((((((....)))))(((((((.....)))------)))).........((((((((.....((((....))))))))))))...-..)) ( -20.10, z-score = -1.04, R) >droEre2.scaffold_4770 10987331 97 - 17746568 --ACCCCACAAUCCCAGCGACUUUUGCGAGUCUGAUUUGAAAUGCGA------AUCAUUUGAACUUUCUCAUUUGACUCCCGAAUCGUCGGAAAUGAGA-AA-AAGC --..............(((((((....)))))(((((((.....)))------)))).......((((((((((.....((((....))))))))))))-))-..)) ( -22.00, z-score = -1.55, R) >droAna3.scaffold_13340 17498677 94 + 23697760 -----CCGCAAUCCCAGCGACUUUUGCGAGUCUGAUUUGAAAAGCGU------ACC-UGAGGACUUUCUCAUUGGACUCCCGAAUCGUCGAAAACGCGAUAA-AAGC -----.(((........((((.((((.(((((..((..((((..(.(------...-..).)..))))..))..))))).))))..)))).....)))....-.... ( -23.72, z-score = -0.96, R) >dp4.chr2 6801027 101 + 30794189 UUACCUAACGACCUUACGACCUUUUGCGAGUCUGAUUUGAAUGUACG-----CACGCGGAACACUUUCUCAUUGGACUCCCGAAUCGUCGGAAAUGAGAUAA-AAGC ................((((..((((.(((((..((..((((((.((-----....))..)))..)))..))..))))).))))..))))............-.... ( -24.50, z-score = -1.79, R) >droPer1.super_0 638606 101 + 11822988 UUACCUAACGACCUUACGACCUUUUGCGAGUCUGAUUUGAAUGUACG-----CACGCGGAACACUUUCUCAUUGGACUCCCGAAUCGUCGGAAAUGAGAUAA-AAGC ................((((..((((.(((((..((..((((((.((-----....))..)))..)))..))..))))).))))..))))............-.... ( -24.50, z-score = -1.79, R) >droWil1.scaffold_181130 14552549 93 - 16660200 ----------AUCUUAGGACAUUUUGCGAGUCUGAUUUGAAAUAAUAAUGAUUAUGAGAAAAAGUUUCUCAUUGGACUCUCGAAUUGUCAAAGUUGAGAUAA-A--- ----------(((((((((((.((((.(((((..((.....(((((....)))))(((((.....)))))))..))))).)))).))))....)))))))..-.--- ( -26.80, z-score = -3.41, R) >droVir3.scaffold_13047 2521273 81 + 19223366 -----------ACUUAAGA-CUUUUGCGAGUCUGAUUCGAAAAAUACC-------------CGUUUUCGUAUUGGACUCCCGAAUCGUCGCUAUCAAAUUAC-ACGC -----------......((-(.((((.(((((..((.((((((.....-------------..)))))).))..))))).))))..))).............-.... ( -21.60, z-score = -3.09, R) >droMoj3.scaffold_6540 26948609 81 - 34148556 -----------ACUUAAGA-CUUUUGCGAGUCUGAUUUGAAAUAUUAU-------------UGAUUUCUUAUUGGACUCCCGAAUCGUCGCUAUCGAAUUAC-AAGC -----------......((-(.((((.(((((..((..(((((.....-------------..)))))..))..))))).))))..))).............-.... ( -20.50, z-score = -3.17, R) >droGri2.scaffold_15074 4017985 95 - 7742996 -----------ACCUAAGA-CUUUUGUGAGUCUGAUUUGAAAUACAUAAGAAUUUCUUGUAUGUUUUCUUAUUGGACUCCCGAAUCGUCGCUAAAUAAUCAAGAAGC -----------......((-(.((((.(((((..((..((((((.(((((.....))))).)).))))..))..))))).))))..))).................. ( -23.50, z-score = -3.16, R) >consensus ___CCCCACGAUCCCAGCAACUUUUGCGAGUCUGAUUUGAAAUGCGA______AUCAUUUAAACUUUCUCAUUGGACUCCCGAAUCGUCGGAAAUGAGAUAA_AAGC ......................((((.(((((..((..((((......................))))..))..))))).))))....................... (-11.38 = -11.54 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:36 2011