| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,861,854 – 14,861,955 |
| Length | 101 |
| Max. P | 0.592962 |
| Location | 14,861,854 – 14,861,955 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 72.99 |
| Shannon entropy | 0.53006 |
| G+C content | 0.45150 |
| Mean single sequence MFE | -25.18 |
| Consensus MFE | -13.25 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.592962 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14861854 101 + 27905053 AUCCGAAUGACUAAGACGGCGGCGAUUUUGGGAAUGGUUGUAACCCAAGGCUAUCAAAAUGGAAACUGCCUAGGGUCGGGAAACUGACGCUUGUUGUACAC ....(.(..((.(((.(((((((.((((...)))).)))))..(((.((((.........(....).)))).)))((((....)))))))))))..).).. ( -28.30, z-score = -1.21, R) >droSim1.chr3R 20904348 101 - 27517382 AUUCGAAUGACUAAGACGGCGGCGAUUUUGGGAAUGGUAUUAACCUAAGGCUAUCAAAAUGGAAACUGCCUAGGGCCGGGAAACUGACGCACGUUGUACAC ...............(((((((((...................((((.(((.........(....).)))))))..(((....))).))).)))))).... ( -25.80, z-score = -1.29, R) >droSec1.super_77 40868 101 - 117255 AUUCGAAUGACUAAGACGGCGGCGAUUUUGGGAAUGGUAUUAACCUAAGGCCAUCAAAAUGGAAACUGCCUAGGGUCGGGAAACUGACGCACGUUGUACAC ...............((((((((...((((((...(((....)))..((.((((....))))...)).))))))(((((....))))))).)))))).... ( -29.00, z-score = -2.09, R) >droYak2.chr3R 3540054 100 + 28832112 AUCCGAAUGACUAAGACGGCGGCGAUUUUGGAAAUGGUAAUA-CCUGAGGCCAUCAAAAUGGAUACUGCCUAGGGUUGGGAAACUAACUCUCGUUGUACCC ......(..((......((((((.((((((...(((((....-......))))))))))).)...))))).((((((((....)))))))).))..).... ( -28.40, z-score = -1.48, R) >droEre2.scaffold_4770 10979077 100 - 17746568 AUCCGAAUGACUAAGACGGCGGCGAUUUUGGGAAUGGUAAUA-CCUAAGGCCAUCAAAAUGGAAACUGCCUAAGGUCGGGAAACUAACUCUCGUUGUACCC ...............(((((((((((((((((...((.....-))..((.((((....))))...)).))))))))))(....)......))))))).... ( -24.40, z-score = -0.19, R) >droMoj3.scaffold_6540 26940644 84 - 34148556 UCACAAACGAUACGGACUUUGGUUAAUUUAAUGAGAUUCGUGGAGUUGAGUCAUCAU--CGAAAACUAUUU--GUUUUUUUCUCUUAC------------- ........((.(..(((..(((((..((..((((((((((......)))))).))))--..)))))))...--)))..).))......------------- ( -15.20, z-score = -0.23, R) >consensus AUCCGAAUGACUAAGACGGCGGCGAUUUUGGGAAUGGUAAUAACCUAAGGCCAUCAAAAUGGAAACUGCCUAGGGUCGGGAAACUGACGCUCGUUGUACAC ...............((((((((...((((((...........)))))).((((....)))).....)))....(((((....)))))....))))).... (-13.25 = -13.82 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:35 2011