| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,826,313 – 14,826,405 |
| Length | 92 |
| Max. P | 0.670611 |
| Location | 14,826,313 – 14,826,405 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 64.87 |
| Shannon entropy | 0.71169 |
| G+C content | 0.44778 |
| Mean single sequence MFE | -22.98 |
| Consensus MFE | -7.84 |
| Energy contribution | -7.91 |
| Covariance contribution | 0.07 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670611 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14826313 92 + 27905053 ------CUGUUCAGCGGGCAAAGUGUUGCCAAAUGUUU--GCAGCAUUUCCUGUUGUCUAC-----GGGGCGUUGUCGCUGCAAAGUUUUG-GUCUUUUAACUUUU- ------((((.(((((((..(((((((((.........--))))))))))))))))...))-----))((((....))))..((((((...-.......)))))).- ( -27.30, z-score = -1.53, R) >droSim1.chr3R 20884506 81 - 27517382 ------CUGUUCAGCGGGCAAAGUGUUGCCAAAUGUUU--GCAGCAUUUCCUGUUGUCUAC-----GGGGCGUUGUCGCUGCAAAGUUUUG-GUC------------ ------((((.(((((((..(((((((((.........--))))))))))))))))...))-----))((((....))))...........-...------------ ( -26.10, z-score = -1.60, R) >droSec1.super_77 5442 92 - 117255 ------CUGUUCAGCGGGCAAAGUGUUGCCAAAUGUUU--GCAGCAUUUCCUGUUGUCUAC-----GGGGCGUUGUCGCUGCAAAGUUUUG-GUCUUUUAACUUUU- ------((((.(((((((..(((((((((.........--))))))))))))))))...))-----))((((....))))..((((((...-.......)))))).- ( -27.30, z-score = -1.53, R) >droEre2.scaffold_4770 10943354 91 - 17746568 ------CCGUUCAGCGGGCAAAGUGUUGCCAAAUGUUU--GCAGCAUUUCCUGUUGUCUAC-----GGGGCGUUGUCGCGGCAAAGUUUCG--UCUUUUAACUUUU- ------((((.(((((((..(((((((((.........--))))))))))))))))...))-----)).(((....)))(((........)--))...........- ( -28.70, z-score = -2.02, R) >droAna3.scaffold_12911 3187257 86 + 5364042 ------CGGUUCAUCGAGCCAAGUGUUGCCAAAAUGUUAUGCCGCACUUCCUGUUGUCUGC-----CCGUGG----------AAAGUUUCUUGUUUUUUAACUUUUU ------.(((((...)))))((((((.((...........)).))))))............-----....((----------((((((...........)))))))) ( -14.00, z-score = 0.48, R) >dp4.chr2 14948019 92 + 30794189 -----CCUGCUCAUCAGGCAAAGUGUUGCCAAAUGUUCCUGCAGCAUUUCCUGCUGUC---------GUCUGCUGCACGGCAAAAAGUUUUCUUCCCCGAACUUUU- -----..(((((((..(((((....)))))..)))....(((((((............---------...))))))).))))((((((((........))))))))- ( -22.16, z-score = -1.02, R) >droPer1.super_0 6360458 100 - 11822988 -----CCUCCUCAUCAGGCAAAGUGUUGCCAAAUGUUUCUGCAGCAUUUCCUGCUGUCUACUCUGUCGUCUGCUGCACGGCAAAA-GUUUUCUUCCCCGAACUUUU- -----......((.((((..(((((((((...........))))))))))))).)).......(((((((....).))))))(((-((((........))))))).- ( -22.50, z-score = -1.60, R) >droWil1.scaffold_181089 4117382 76 - 12369635 ------UUAUUCAUCAGGCAAAGUGUUGCCAAAUGUUUUUGCAGCAUUUCCUGUUGUCUA----------------------AAAGUUUCU--UCUUUUAACUUUU- ------.....((.((((..(((((((((.(((....)))))))))))))))).))..((----------------------((((.....--.))))))......- ( -17.80, z-score = -3.65, R) >droVir3.scaffold_13047 6218126 94 - 19223366 ---CUCUUUAUGAUUUCGCCAAGUGUUGCCAAAUGUUU--GCAGCAUUUCCUAUUGUCUACUU--UAAGGCGCUGGCGCAAGAAGGCUUCUUUUACCCUUU------ ---.(((((.((....(((((((((((((.........--)))))))))......((((....--..))))...)))))).)))))...............------ ( -19.70, z-score = 0.02, R) >droMoj3.scaffold_6540 28849057 97 + 34148556 CUGUUUGUGAUGUUUUGGCUAAGUGUUGCCAAAUGUUU--GCAGCAUUUCCUGUUGUCUACUU--UAAGGCGCUGACGCAGGAUGGCUUCGCAUACCCUUU------ ..((.(((((...((((((........)))))).....--..(((...((((((.(((..(..--......)..)))))))))..)))))))).)).....------ ( -27.20, z-score = -0.93, R) >droGri2.scaffold_15074 3712537 84 - 7742996 -------UUUUUUUUUUGCCAAGUGUUGCCAAAUGUUC--GCAGCAUUUCCUGUUGUCUACUU--UAAGG------CGCGCGAAGGCUUCUUAUACCCUUG------ -------..........(((..((((.(((....((..--((((((.....))))))..))..--...))------)))))...)))..............------ ( -20.00, z-score = -1.59, R) >consensus ______CUGUUCAUCGGGCAAAGUGUUGCCAAAUGUUU__GCAGCAUUUCCUGUUGUCUAC_____GGGGCGCUGUCGCGGCAAAGUUUCU_GUCCCCUAACUUUU_ ................(((.(((((((((...........)))))))))...))).................................................... ( -7.84 = -7.91 + 0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:30 2011