| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,939,535 – 7,939,634 |
| Length | 99 |
| Max. P | 0.556363 |
| Location | 7,939,535 – 7,939,634 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.80 |
| Shannon entropy | 0.34108 |
| G+C content | 0.32912 |
| Mean single sequence MFE | -12.69 |
| Consensus MFE | -7.98 |
| Energy contribution | -7.98 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.556363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7939535 99 - 23011544 UAAACUCAUGCAUAAUGCAUUCUGUGCUCUCGUAUUCUCGUAUUUUUUUUUCUACGCCCUUUUACUGAAUACAAUCAGUGUGAUUUUUCUCACAUUUUC .........(((((........)))))....((((((..(((....................))).))))))....(((((((......)))))))... ( -15.15, z-score = -2.71, R) >droSim1.chr2L 7735387 97 - 22036055 UAAACUCAUGCAUAAUGCAUUCUGUGCUCUCGUAUUUUCGU-AUUUUUUUUCUACGCCCUUUUACUGAAUACAAUCGGUGUGAUUUUUCUCACAUUUU- .........(((((........)))))....((((((..((-(...................))).))))))....(((((((......)))))))..- ( -13.21, z-score = -1.51, R) >droSec1.super_3 3453566 98 - 7220098 UAAACGCAUGCAUAAUGCAUUCUGUGCUCUCGUAUUUUCGU-UUUUUUUUUCUACGCCCUUUUACUGAAUACAAUCGAUGUGAUUUUUCUCACAUUUUC .....((((.....))))....((((.((..(((....(((-...........)))......))).)).))))...(((((((......)))))))... ( -13.90, z-score = -1.56, R) >droYak2.chr2L 17369716 94 + 22324452 UAAACUCAUGUAUAUUGUAUUUUGUGCUCUCUUCUUU-----UUUUUUUUUAAACGCCCUUUUACUGAUUACAAUCCGUGUGAAUUUUCUCACAUUUUU ........((((....(((....(.((..........-----.............)).)...)))....))))....((((((......)))))).... ( -8.20, z-score = -1.16, R) >droEre2.scaffold_4929 16862063 84 - 26641161 UAAACUCAUGCAUGAU--AUUCUGUGCUCUCUUUAG------UUGGUUUCUCUACACCUUCUCGCUGAUUAAAAUCGGUGUGAUUUUUCUCA------- .........((((...--.....)))).........------..(((........))).((.(((((((....))))))).)).........------- ( -13.00, z-score = -1.16, R) >consensus UAAACUCAUGCAUAAUGCAUUCUGUGCUCUCGUAUUUUCGU_UUUUUUUUUCUACGCCCUUUUACUGAAUACAAUCGGUGUGAUUUUUCUCACAUUUU_ .........(((((........)))))....................................(((((......)))))((((......))))...... ( -7.98 = -7.98 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:45 2011