| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,792,300 – 14,792,413 |
| Length | 113 |
| Max. P | 0.972291 |
| Location | 14,792,300 – 14,792,413 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 69.33 |
| Shannon entropy | 0.48532 |
| G+C content | 0.34516 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -16.05 |
| Energy contribution | -17.05 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14792300 113 + 27905053 ------CAAGUCAUAAAGGUGUCUAGAAGUACGCAGCACGCUGACAUUUUGCAUAUUGUUGCAUUCUUUUGAGACACUUUAAGAAAUAAUAUUAGAACACUGUUCAUUUCUGCCUGUCA ------...(.((..((((((((((((((...((((((.((.........))....))))))...))))).))))))))).((((((.......((((...))))))))))...)).). ( -24.81, z-score = -0.63, R) >droEre2.scaffold_4770 10907732 108 - 17746568 UAAAAGUCAGUCAUAAAGUUGUCUAGAGGCAGGCAGAGCGCAGACUUCAGGGGUAUUGUUGAAUACUUUU-GGACACUUUAAUAAAUAGUAUGGAAACACUGUAAGUCA---------- .....(((((((......(((((....)))))((.....)).)))).((((((((((....)))))))))-))))..........(((((..(....))))))......---------- ( -23.30, z-score = -0.73, R) >droSec1.super_166 7147 107 - 36471 ------CAAGUCAUAAAGGUGUCUAGAAGUACGCGAC----UGAC-UUUUGCAUAUUGUUGCAAACUUUU-AGACACUUUAAUAAAUAAUAUUAAAACUCUGUUAAUUUCUGUCUGUCA ------..((.((.(((.((((((((((((..(((((----....-...........)))))..))))))-))))))(((((((.....)))))))..........))).)).)).... ( -24.56, z-score = -2.62, R) >droSim1.chr3R 20839145 94 - 27517382 ------CAAGUCAUAAAGGUGUCUAGAAGUACGCAAC----UGAC-UUAUGCAUAUUGUUGCUUACUUUU-AGAUACUUUAAUAAAG-------------UGUUCAUUUCUGUCUGUCA ------.........((((((((((((((((.(((((----....-...........))))).)))))))-))))))))).......-------------................... ( -25.46, z-score = -3.04, R) >consensus ______CAAGUCAUAAAGGUGUCUAGAAGUACGCAAC____UGAC_UUAUGCAUAUUGUUGCAUACUUUU_AGACACUUUAAUAAAUAAUAUUAAAACACUGUUAAUUUCUGUCUGUCA ...............((((((((((((((((.(((((....((........))....))))).))))))).)))))))))....................................... (-16.05 = -17.05 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:22 2011