| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,784,258 – 14,784,313 |
| Length | 55 |
| Max. P | 0.549300 |
| Location | 14,784,258 – 14,784,313 |
|---|---|
| Length | 55 |
| Sequences | 13 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 88.70 |
| Shannon entropy | 0.26058 |
| G+C content | 0.57290 |
| Mean single sequence MFE | -15.89 |
| Consensus MFE | -13.92 |
| Energy contribution | -13.95 |
| Covariance contribution | 0.02 |
| Combinations/Pair | 1.36 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14784258 55 + 27905053 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCCCC .........((((.((((((...(....).)))))).)))).............. ( -16.70, z-score = -0.78, R) >droSim1.chr3R 20829168 55 - 27517382 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCCCC .........((((.((((((...(....).)))))).)))).............. ( -16.70, z-score = -0.78, R) >droSec1.super_5 753783 55 - 5866729 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCCCC .........((((.((((((...(....).)))))).)))).............. ( -16.70, z-score = -0.78, R) >droYak2.chr3R 3464923 55 + 28832112 GAGACAUGCUCCAGCUGGGACCCGGCAACUUCCCAGAUGGAUAACAGAGGCCCCC .........((((.((((((...(....).)))))).)))).............. ( -16.00, z-score = -0.73, R) >droEre2.scaffold_4770 10899809 55 - 17746568 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCCCC .........((((.((((((...(....).)))))).)))).............. ( -16.70, z-score = -0.78, R) >droAna3.scaffold_12911 3148226 53 + 5364042 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCU-- .........((((.((((((...(....).)))))).))))............-- ( -16.70, z-score = -1.07, R) >dp4.chr2 14904680 53 + 30794189 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCC-- .........((((.((((((...(....).)))))).))))............-- ( -16.70, z-score = -1.10, R) >droPer1.super_0 6316320 53 - 11822988 GAGACAUGCUCCAGCUGGGACCCGGCAACUUCCCAGAUGGAUAACAGAGGCCC-- .........((((.((((((...(....).)))))).))))............-- ( -16.00, z-score = -1.02, R) >droWil1.scaffold_181108 3050116 53 + 4707319 GAGAUAAACUUCAGCUGGGACCUGGAAAUUUUGCUGAUGGAUAACAGAGGGCU-- ..(.((..(.(((((.................))))).)..)).)........-- ( -5.83, z-score = 1.36, R) >anoGam1.chr2R 58119239 55 - 62725911 GAGAUAAGCUCCAACUGGGGCCAGGACACUUCGCCGAUGGAUAGCCAAGGCCCCC (((.....))).....((((((.((........))..(((....))).)))))). ( -18.30, z-score = -1.05, R) >droGri2.scaffold_14830 1563417 53 - 6267026 GAGAUAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGAUA-- .........((((.((((((...(....).)))))).))))............-- ( -16.70, z-score = -1.73, R) >droMoj3.scaffold_6540 18759144 53 + 34148556 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACACAGAUCG-- ..((..((.((((.((((((...(....).)))))).)))).....))..)).-- ( -16.90, z-score = -2.34, R) >droVir3.scaffold_13047 15275890 53 + 19223366 GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGACCU-- .........((((.((((((...(....).)))))).))))............-- ( -16.70, z-score = -1.94, R) >consensus GAGACAUGCUCCAGCUGGGACCUGGCAACUUCCCAGAUGGAUAACAGAGGCCC__ .........((((.((((((...(....).)))))).)))).............. (-13.92 = -13.95 + 0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:21 2011