| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,767,661 – 14,767,753 |
| Length | 92 |
| Max. P | 0.720742 |
| Location | 14,767,661 – 14,767,753 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 80.97 |
| Shannon entropy | 0.25402 |
| G+C content | 0.50725 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -13.09 |
| Energy contribution | -13.53 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.720742 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14767661 92 - 27905053 -CCCGAAAAUCAUAUCCAAAAACCCAAUGCCAUGGUCCGCAAUCCGCAGUCCGCUGUCCAUGGUCCAUAAUCCAGCGGCUAGCCUAGUUGGAA -...........................(((((((.(.((............)).).)))))))......((((((((....))..)))))). ( -21.50, z-score = -1.31, R) >droSim1.chr3R 20812891 82 + 27517382 CCCCGAAAAACAAAUCCAAAAA---AAACCCA--------AUCCCAUGGUCCGCAGUCCAUGGUCCAUAAUCCAGCGCCUAGCCUAGUUGGAA ......................---.......--------...((((((.(....).)))))).......((((((..........)))))). ( -16.10, z-score = -2.60, R) >droSec1.super_5 737776 82 + 5866729 CCCCGAAAAACAAAUCCAAAAA---AAAGCCA--------AUGCCAUGGUCCGCAGUCCAUGGUCCGUAAUCCAGCGCCUGGCCUAGUUGGAA ..............(((((...---...((((--------..(((((((.(....).))))))).(((......)))..))))....))))). ( -21.80, z-score = -2.43, R) >consensus CCCCGAAAAACAAAUCCAAAAA___AAAGCCA________AUCCCAUGGUCCGCAGUCCAUGGUCCAUAAUCCAGCGCCUAGCCUAGUUGGAA ...........................................((((((.(....).)))))).......((((((..........)))))). (-13.09 = -13.53 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:19 2011