| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,754,866 – 14,754,935 |
| Length | 69 |
| Max. P | 0.806737 |
| Location | 14,754,866 – 14,754,935 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 62.53 |
| Shannon entropy | 0.75757 |
| G+C content | 0.45549 |
| Mean single sequence MFE | -17.70 |
| Consensus MFE | -6.05 |
| Energy contribution | -6.24 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 2.06 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806737 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14754866 69 - 27905053 CAUCAAGCAUCCGCUUUUCGGCGGAUAUAGGGAGGGAAGUCCCUGCGACAAGCCUAUCGAGAUUGCAAA ......(((((((((....)))))))....(.((((....)))).)..................))... ( -20.00, z-score = -0.74, R) >droEre2.scaffold_4770 10870629 69 + 17746568 CAUAAAGCAUCCGCUUGUAGGCGGAAAUAGGGAAGGAACUCCUUCUGCCAAAUCUGGCGAUACUGUAAG .........((((((....)))))).((((((((((....))))))((((....))))....))))... ( -24.70, z-score = -3.52, R) >droYak2.chr3R 3424890 69 - 28832112 CAUCAAGCAUUCGCUUUUCGGCGGAAAUAGGGAGGGAAGUCCUUCUGCCAAACCUAGCGAUACUGCAAG ......(((.(((((....((((((....((((......))))))))))......)))))...)))... ( -21.40, z-score = -1.85, R) >droSim1.chr3R 20799618 69 + 27517382 UAUCAAGCAUCCGCUUUUCGGCGGAUAUAGAGAGGGAAGUCCCUGCGACAAGCCUAUCGAGAUUGCAAG ......(((((((((....)))))))((((..((((....))))((.....)))))).......))... ( -19.80, z-score = -1.18, R) >droSec1.super_5 725074 69 + 5866729 CAUCAAGCAUCCGCUUUUCGGCGGAUAUAGAGAGGGAAGUCCCUGCGACAAACCUAUCGAGAUUGCAAG ......(((((((((....)))))))...((.(((...(((.....)))...))).))......))... ( -19.10, z-score = -1.37, R) >droMoj3.scaffold_6540 18725260 69 - 34148556 CAUCACAGGUAAGUUUGAAAUAGAACAGCGACAAGUAAAUUGCCACUGCCAAAUUAUAGCAAUUUUAAA .......((((.((((......)))).((((........))))...))))................... ( -7.80, z-score = 0.11, R) >droGri2.scaffold_14830 1529769 66 + 6267026 CAUUAACUGUAAGGUACAUGAAGAUUCAAACAAAAGAAAAUUCAGCGAGCAACUUUUUUCG-CUGAA-- (((..(((....)))..)))....................(((((((((........))))-)))))-- ( -11.10, z-score = -1.09, R) >consensus CAUCAAGCAUCCGCUUUUCGGCGGAUAUAGAGAGGGAAGUCCCUGCGACAAACCUAUCGAGAUUGCAAG ......(((((((((....)))))))......((((....)))).(((........))).....))... ( -6.05 = -6.24 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:18 2011