| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,745,375 – 14,745,484 |
| Length | 109 |
| Max. P | 0.998836 |
| Location | 14,745,375 – 14,745,484 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 85.45 |
| Shannon entropy | 0.23484 |
| G+C content | 0.28652 |
| Mean single sequence MFE | -23.98 |
| Consensus MFE | -19.60 |
| Energy contribution | -20.73 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.04 |
| Mean z-score | -3.92 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.51 |
| SVM RNA-class probability | 0.998836 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 14745375 109 + 27905053 UGAAAAAAGGAGUAAUUCCAUGCAAAAAAGGAGCAAUUCCA-AUCAAAAAAGGAGCAAUUCCAUUACAAAAAAGGAGUAAUUCCAUUACAAAAAAAGGAGUAAUUCCAAC--- ........(((((.(((((..........((((...)))).-.........((((..(((((...........)))))..))))............))))).)))))...--- ( -23.20, z-score = -4.62, R) >dp4.chr2 14868861 107 + 30794189 UGAAAAAAGGAUUAAAUCCAUUGAAAAAAGGAGUAAUUCCA-UUGAAAAAAGGAGCAAUUCCAUUG-AAAAAAGGAGUAAUUCCAUU-UAAAAAAAGGAGCAAUUCCAUU--- ........((((...))))..........(((((..((((.-((....)).((((..(((((.((.-...)).)))))..))))...-........))))..)))))...--- ( -22.50, z-score = -2.84, R) >droPer1.super_0 6279986 107 - 11822988 UGAAAAAAGGAGUAAUUCCAUUGAAAAAAGGAGUAAUUCCA-UUGAAAAAAGGAGCAAUUCCAUUG-AAAAAAGGAGUAAUUCCAUU-UUAAAAAAGGAGCACUUCCAUU--- (((((...(((((.(((((.((....)).))))).))))).-.........((((..(((((.((.-...)).)))))..)))).))-))).....((((...))))...--- ( -25.60, z-score = -3.45, R) >droGri2.scaffold_14906 954736 106 + 14172833 UGAAAAAAGGAGUAAUUCCAC--AAAAAAGGAGUAAUUCCAAUUUAAAAAAGGAUUUGAUCCAA---AAAAAAGGAGUAAUUCCAUU--AAAAAAAGGAGUAAUUCCAAUAUU ........(((((.(((((..--......))))).)))))...........((((...))))..---......(((((.(((((...--.......))))).)))))...... ( -24.60, z-score = -4.77, R) >consensus UGAAAAAAGGAGUAAUUCCAUUGAAAAAAGGAGUAAUUCCA_UUGAAAAAAGGAGCAAUUCCAUUG_AAAAAAGGAGUAAUUCCAUU_UAAAAAAAGGAGCAAUUCCAAU___ ........(((((.(((((..........))))).)))))...........((((...))))...........(((((.(((((............))))).)))))...... (-19.60 = -20.73 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:16 2011