| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,739,424 – 14,739,517 |
| Length | 93 |
| Max. P | 0.617473 |
| Location | 14,739,424 – 14,739,517 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 82.81 |
| Shannon entropy | 0.29118 |
| G+C content | 0.49104 |
| Mean single sequence MFE | -27.04 |
| Consensus MFE | -19.58 |
| Energy contribution | -20.74 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.617473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14739424 93 - 27905053 GUAGCUGGCUGGCUGGCUUAAAUUAGCCGGCCGAUGAUUCAUUUUGGGGGUUGUCCACUUACAUAAGAUGAGC-UCACCCAAUGUGAAAACUCU .....(((((((((((......)))))))))))....(((((.(((((....(..(((((....))).))..)-...))))).)))))...... ( -31.80, z-score = -2.36, R) >droSim1.chr3R 20782832 82 + 27517382 GUAGCU-GCUGGCUGGCUAAAAUUAGCCGGCCGAUGAUUCAUUUUGGGGGUUGUCCACUUACAUAAGAGCUGCUUUACCCACU----------- ((((((-.(((((((((((....)))))))))((..((((.......))))..))..........))))))))..........----------- ( -30.50, z-score = -2.72, R) >droSec1.super_5 709446 82 + 5866729 GUAGCU-GCUGGCUGGCUAAAAUUAGCCGGCCGAUGACUCAUUUUGGGGGUUGUCCACUUACAUAAGAGCUGCUUUACCCACU----------- ((((((-.(((((((((((....)))))))))((..((((.......))))..))..........))))))))..........----------- ( -32.90, z-score = -3.52, R) >droYak2.chr3R 3409488 82 - 28832112 GUUCCU-GCUGGCUGGCUAAAAUUAGUCGGCCAAUGAUUCAUUUUGGGGGUUGUCCACUUACAUAAGAGCCUUCUAACCCACU----------- ......-..((((((((((....))))))))))..............((((((....(((......))).....))))))...----------- ( -22.10, z-score = -0.93, R) >droEre2.scaffold_4770 10854925 81 + 17746568 GUAGCU-GCUGCCUGGUUCAAAAAAGCCGGCCGAUGAUUCAUUUGGGGGGUUGUCCACUUACAUCAGAGCUUC-UGACCCACC----------- ((((.(-(..(((.((((......))))))).((..((((.......))))..)))).)))).((((.....)-)))......----------- ( -17.90, z-score = 1.55, R) >consensus GUAGCU_GCUGGCUGGCUAAAAUUAGCCGGCCGAUGAUUCAUUUUGGGGGUUGUCCACUUACAUAAGAGCUGC_UUACCCACU___________ ((((((....((((((((......))))))))((..((((.......))))..))............))))))..................... (-19.58 = -20.74 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:13 2011