| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,687,040 – 14,687,136 |
| Length | 96 |
| Max. P | 0.681927 |
| Location | 14,687,040 – 14,687,136 |
|---|---|
| Length | 96 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 82.84 |
| Shannon entropy | 0.34537 |
| G+C content | 0.36669 |
| Mean single sequence MFE | -18.81 |
| Consensus MFE | -11.42 |
| Energy contribution | -12.16 |
| Covariance contribution | 0.74 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.681927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14687040 96 - 27905053 GCCCCGGCAAAUUGCCCGACAUUUGGAAUUAAUGAGC---ACUUUAAUCAAAUUUUCCACGCAAAAGCACGUUCAUUAAUUUUGUACGCAAUUAUUACU----------- ((....)).((((((...(((....((((((((((((---..(((....)))........((....))..)))))))))))))))..))))))......----------- ( -19.60, z-score = -2.12, R) >droSim1.chr3R 20728833 96 + 27517382 GCCCCGGCAAAUUGCCCGACAAUUGGAAUUAAUGAGC---ACUUUAAUCAAAUUUUCCACGCAAAAGCACGUUCAUUAAUUUUGUACGCAAUUAUUACU----------- ((....)).((((((...(((....((((((((((((---..(((....)))........((....))..)))))))))))))))..))))))......----------- ( -19.60, z-score = -2.11, R) >droSec1.super_5 657715 96 + 5866729 GCCCCGGCAAAUUGCCCGACAAUUGGAAUUAAUGAGC---ACUUUAAUCAAAUUUGCCACGCAAAAGCACGUUCAUUAAUUUUGUACGCAAUUAUUACU----------- ((....)).((((((...(((....((((((((((((---....(((......)))....((....))..)))))))))))))))..))))))......----------- ( -20.70, z-score = -1.87, R) >droYak2.chr3R 3343716 96 - 28832112 GCCCGGGCAAAUUGCCCGACAAUUGGAAUUAAUGAAC---ACUUUAAUCAAAUUUUCCACGCAAAAGCACGCUCAUUAAUUUUGUACGCAAUUAUUACA----------- ((.(((((.....)))))......(((((((((((.(---..(((....)))........((....))..).)))))))))))....))..........----------- ( -18.80, z-score = -1.63, R) >droEre2.scaffold_4770 10798965 96 + 17746568 GCCCGGGCAAAUUGCCCGACAAUUGGAAUUAAUGAGC---ACUUUAAUCAAAUUUUCCACGCAAAAGCACGUUCAUUAAUUUUGUACGCAAUUAUUACA----------- ((.(((((.....)))))......(((((((((((((---..(((....)))........((....))..)))))))))))))....))..........----------- ( -23.00, z-score = -2.71, R) >droAna3.scaffold_12911 3040197 96 - 5364042 ACCUCUCGAAAUUGCCCGACAAUUAGAAUUAAUGAGC---ACUUUAAUCAAAUUUUCCGCGCAAAAGCACGUUCAUUAAUUUUGUACGCAAUUAUUACU----------- .........((((((...(((....((((((((((((---..(((....)))......((......))..)))))))))))))))..))))))......----------- ( -18.10, z-score = -2.74, R) >dp4.chr2 14811633 96 - 30794189 GCCACGGCAAAUUGCCGGACAAUUGGAAUUAAUGAGG---ACUUUAAUCAAAUUUUCUACGCCAAAGCACGUUCAUUAAUUUCGAACGCAAUUAUUACU----------- ((..((((.....)))).....(((((((((((((((---(......))...........((....))...))))))))))))))..))..........----------- ( -21.60, z-score = -2.63, R) >droPer1.super_0 6222391 96 + 11822988 GCCAAGGCAAAUUGCCGGACAAUUGGAAUUAAUGAGG---ACUUUAAUCAAAUUUUCUACGCCAAAGCACGUUCAUUAAUUUCGAACGCAAUUAUUACU----------- ((...(((.....)))......(((((((((((((((---(......))...........((....))...))))))))))))))..))..........----------- ( -19.30, z-score = -1.75, R) >droVir3.scaffold_12822 3227954 107 - 4096053 GCCCACAUAAAUUGUCUCACAAUUGGAAUAAAUGAGC---ACUUUAAUCAAAUUUUCGCCACCCAAUCACGUUCAUUAAUAUUGUACGCAAUUAUUCAGAAGCUCCAUCA ((.......(((((.....))))).((((((((((((---..............................)))))))...((((....)))))))))....))....... ( -10.51, z-score = 0.14, R) >droGri2.scaffold_14830 2635568 110 + 6267026 GUACACGCAAACUGUCUCACAAUUGGAAUUAAUGAGCGCUACUUUAAUCAAAUUUUCGCCACCGAAUCACGUUCAUUAAUUUUGUACGCAAUUAUUAUGAUGCUUCAUCU (((((..(((..((.....)).)))(((((((((((((................((((....))))...))))))))))))))))))...........((((...)))). ( -17.51, z-score = -0.80, R) >droMoj3.scaffold_6540 19133063 107 + 34148556 ACCCACGCAAAUUGUCUCACAAUUGGAAUUAAUGAAC---AGUUUAAUCAAAUUUUCUCCACCGAAUCACGUUCAUUAAUUUUGUACGCAAUCAUUAUGGUGCUCCAUCU ......((.(((((.....)))))(((((((((((((---(((((....)))))(((......)))....)))))))))))))....)).......((((....)))).. ( -18.20, z-score = -1.72, R) >consensus GCCCCGGCAAAUUGCCCGACAAUUGGAAUUAAUGAGC___ACUUUAAUCAAAUUUUCCACGCAAAAGCACGUUCAUUAAUUUUGUACGCAAUUAUUACU___________ .........((((((...(((....((((((((((((....((((..................))))...)))))))))))))))..))))))................. (-11.42 = -12.16 + 0.74)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:06 2011