| Sequence ID | dm3.chr3R |
|---|---|
| Location | 14,676,603 – 14,676,694 |
| Length | 91 |
| Max. P | 0.809900 |
| Location | 14,676,603 – 14,676,694 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 77.27 |
| Shannon entropy | 0.48523 |
| G+C content | 0.46236 |
| Mean single sequence MFE | -26.94 |
| Consensus MFE | -16.01 |
| Energy contribution | -15.89 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809900 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 14676603 91 - 27905053 GUUGAUGCCGAGGUGCUGA-AAUGCCGAUGUGUGCUGCGAGUAAUUUGAAAUUAUGCGCGGCAACGCUACGACGUAUGCUUAACAUAAUCAA (((((.((..(.((((...-...))((..((((((((((.(((((.....))))).)))))).))))..)))).)..)))))))........ ( -24.60, z-score = -0.31, R) >droSim1.chr3R 20717377 91 + 27517382 GUUGAUGCCGAGUCGCUGA-AAUGCCGAUGUGUGCUGCGAGUAAUUUGAAAUUAUGCGCGGCAACGCCACGACGUAUGCUUAACAUAAUCAA (((((.((...(((((...-...))....((((((((((.(((((.....))))).)))))).))))...)))....)))))))........ ( -26.50, z-score = -0.80, R) >droSec1.super_5 643577 91 + 5866729 GUUGAUGCCGAGUCGCUGA-AAUGCCGAUGUGUGCUGCGAGUAAUUUGAAAUUAUGCGCGGCAACGCCACGACGUAUGCUUAACAUAAUCAA (((((.((...(((((...-...))....((((((((((.(((((.....))))).)))))).))))...)))....)))))))........ ( -26.50, z-score = -0.80, R) >droEre2.scaffold_4770 10788290 91 + 17746568 GUUGAUGCCGAGGCGCUGA-AAUGCCGAUGUGUGCUGCGAGUAAUUUGAAAUUAUGCGCGGCAGCGCCACGACGUAUGCUUAACAUAAUCAA (((((.((((.((((((..-.((((....))))((((((.(((((.....))))).)))))))))))).))......)))))))........ ( -28.90, z-score = -0.80, R) >droAna3.scaffold_12911 3030134 89 - 5364042 GUUGAUGCUAAAACCUGGAUGCU--UGAUGUG-GCUGCGUGUAAUUUGAAAUUAUGCGCGGGAGCGUAACGAUGUAUGCUUAACAUAAUCAA .(((((((............)).--...((((-.(((((((((((.....)))))))))))(((((((......)))))))..))))))))) ( -23.10, z-score = -1.32, R) >dp4.chr2 14803179 92 - 30794189 GUUGAUGCUCUCGCGAAGGCUGAAAUGAUGUGUGCUGCGUGUAAUUUGAAAUUAUGCGCGGCAGCGCCAAGACGUAUGCUUAACAUAAUCAA (((((.((...(((....)).........((((((((((((((((.....))))))))))))).)))......)...)))))))........ ( -28.50, z-score = -1.15, R) >droPer1.super_0 6213992 92 + 11822988 GUUGAUGCUCUCGCGAAGGCUGAACUGAUGUGUGCUGCGUGUAAUUUGAAAUUAUGCGCGGCAGCGCCAAGACGUAUGCUUAACAUAAUCAA (((((.((...(((....))....((...((((((((((((((((.....))))))))))))).)))..))..)...)))))))........ ( -29.50, z-score = -1.41, R) >droWil1.scaffold_181108 2919046 78 - 4707319 --------------GUUGAUGUUGUUGAUGUGUGCUGCGUGUAAUUUGAAAUUAUGCGCGACAGCGCAAGGACGUAUGCUUAACAUAAUCAA --------------.(((((..((((((.((((((((((((((((.....))))))))))....(....)...))))))))))))..))))) ( -23.90, z-score = -1.50, R) >droVir3.scaffold_12822 3216950 73 - 4096053 -----------------GUUGAUGCCG--CUCUGCUGCGUGUAAUUUGAAAUUAUGCGCGGCGGCAGCACGGCGUAUGCUUAACGUAAUCAA -----------------.(((((((((--((((((((((((((((.....)))))))))))))).)))..))).((((.....))))))))) ( -29.70, z-score = -2.38, R) >droMoj3.scaffold_6540 19121909 73 + 34148556 -----------------GUUGAUGCCG--CUCUGCUGCGUGUAAUUUGAAAUUAUGCGCGGCAGCAACACGGCGUAUGCUUAACAUAAUCAA -----------------.(((((((((--..((((((((((((((.....)))))))))))))).....)))).((((.....))))))))) ( -28.20, z-score = -3.04, R) >consensus GUUGAUGCCGAGGCGCUGA_AAUGCCGAUGUGUGCUGCGUGUAAUUUGAAAUUAUGCGCGGCAGCGCCACGACGUAUGCUUAACAUAAUCAA .............................((((((((((..((((.....))))..))))))).)))...((..((((.....)))).)).. (-16.01 = -15.89 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:26:05 2011